CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19300

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At5g19300 832050 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV S.X. H.G.
0.67 81.6 At3g05130 819675 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.44 57.2 At1g71850 843515 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;POFMVB S.X. H.G.
0.43 55.3 At5g26860 832744 LON1 (LON PROTEASE 1) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. S.X. H.G.
0.37 45.0 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA S.X. H.G.
0.36 43.6 At2g47990 819411 SWA1 (SLOW WALKER1) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
173.3 100.0 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
137.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.8 99.9 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
105.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
100.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
94.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
89.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.5 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At4g30630 829186 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At3g18690 821400 MKS1 (MAP kinase substrate 1) Encodes a nuclear-localized member of a plant specific gene family involved in mediating responses to pathogens. Interacts with WRKY transcriptional regulators. C.G. S.X.
0.02 6e-1 36 At5g62770 836398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF C.G. S.X.
0.02 6e-1 36 At2g24255 816960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 36 At2g04850 815031 auxin-responsive protein-related F:unknown;P:unknown;C:membrane;PMFOB C.G. S.X.
0.01 2e+0 34 At5g64500 836571 membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-3 44 Glycine max GmaAffx.88289.1.S1_at BE473784 - - 1e-3 At5g19300 - C.G. S.X.
0.02 5e+0 32 Hordeum vulgare S0000800248D01F1_s_at S0000800248D01F1 - - 3e+0 At3g23380 RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5) C.G. S.X.
0.06 2e-8 61 Oryza sativa Os04g0244500 AK065922.1 - Protein of unknown function DUF171 family protein 1e-8 At5g19300 - C.G. S.X.
0.27 6e-11 69 Populus trichocarpa Ptp.12.1.A1_at CV257556 hypothetical protein - 4e-11 At5g19300 - C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.7892.1.A1_a_at BJ312151 - - 4e+0 At3g01331 - C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615241_at CF516525 - - 4e+0 At5g19300 - C.G. S.X.
0.04 1e-9 63 Zea mays Zm.12429.1.A1_at CA403429 conserved protein - 3e-9 At5g19300 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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