CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19120

Gene name aspartic-type endopeptidase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF S.X. H.G.
0.75 86.9 At5g20250 832147 DIN10 (DARK INDUCIBLE 10) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.60 75.7 At3g15450 820784 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PBOMF S.X. H.G.
0.57 73.8 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB S.X. H.G.
0.55 70.6 At1g80440 844383 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.7 99.6 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
18.0 99.5 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
17.6 99.5 GSM245494 9 hr Hypoxia Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
16.8 99.5 GSM245474 9 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
16.4 99.5 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
16.3 99.5 GSM253161 8h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.2 99.4 GSM253160 6h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.2 99.4 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.1 99.4 GSM245472 2 hr Hypoxia Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
15.0 99.4 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At4g20850 827833 TPP2 (TRIPEPTIDYL PEPTIDASE II) Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. C.G. S.X.
0.01 2e+0 34 At5g24360 832507 IRE1-1 (INOSITOL REQUIRING 1-1) F:endoribonuclease activity, producing 5'-phosphomonoesters, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g21482 832248 CKX7 (CYTOKININ OXIDASE 7) This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. C.G. S.X.
0.01 2e+0 34 At2g47000 819314 ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above. C.G. S.X.
0.01 2e+0 34 At1g74300 843770 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;BPOFMA C.G. S.X.
0.02 2e+0 34 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM C.G. S.X.
0.01 2e+0 34 At1g10680 837611 PGP10 (P-GLYCOPROTEIN 10) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:mitochondrion;BOMAFPV C.G. S.X.
0.02 9e+0 32 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max Gma.3650.1.S1_at BU548987 - - 1e-2 At1g03220 extracellular dermal glycoprotein, putative / EDGP, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig15014_at Contig15014 - - 4e-1 At4g24980 - C.G. S.X.
0.02 2e+1 32 Oryza sativa OsAffx.5571.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.26302.3.A1_at CK094898 - - 6e+0 At5g64010 unknown protein C.G. S.X.
0.02 9e+0 32 Triticum aestivum Ta.3886.1.S1_at BJ254650 - - 3e-1 At5g49050 - C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1617752_at CF207692 hypothetical protein LOC100259548 - 4e+0 At5g44973 - C.G. S.X.
0.02 2e+1 30 Zea mays Zm.906.1.S1_at BF728599 - - 9e-2 At5g38400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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