CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19050

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g19050 832024 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;FOBMPV S.X. H.G.
0.50 65.3 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.48 62.5 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
0.45 58.3 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. S.X. H.G.
0.41 52.4 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. S.X. H.G.
0.39 48.4 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP S.X. H.G.
0.36 43.6 At3g02290 821179 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFVB S.X. H.G.
0.34 39.8 At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF S.X. H.G.
0.31 33.8 At1g72175 843549 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV S.X. H.G.
0.29 30.3 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.4 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.1 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
21.7 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.4 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.9 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.7 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.5 99.5 GSM142730 CH001_ATH1_A009-Hampt-wsc_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
16.2 99.5 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
14.9 99.4 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
14.5 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 38 At3g18390 821368 EMB1865 (embryo defective 1865) F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA C.G. S.X.
0.02 1e-1 38 At2g25620 817102 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA C.G. S.X.
0.01 5e-1 36 At5g26250 832694 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA C.G. S.X.
0.03 2e+0 34 At5g47455 834795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 2e+0 34 At5g11060 830973 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 3e-34 147 Glycine max GmaAffx.61825.1.S1_at AI988362 - - 2e-34 At5g19050 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig16816_at Contig16816 - - 5e+0 At5g25940 early nodulin-related C.G. S.X.
0.08 4e-3 44 Oryza sativa Os07g0211800 AK065682.1 - Conserved hypothetical protein 5e-3 At5g19050 unknown protein C.G. S.X.
0.59 8e-81 301 Populus trichocarpa Ptp.3991.1.S1_s_at DN488960 hypothetical protein - 7e-81 At5g19050 unknown protein C.G. S.X.
0.10 4e-2 40 Triticum aestivum Ta.3636.1.S1_at CK204852 - - 5e-2 At5g19050 unknown protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1618182_at CF604629 hypothetical protein LOC100259544 - 9e-8 At5g08690 ATP synthase beta chain 2, mitochondrial C.G. S.X.
0.08 2e-7 56 Zea mays Zm.16741.1.S1_at AY108913.1 - - 8e-7 At5g19050 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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