CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g18780

Gene name F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g18780 831996 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.35 41.6 At5g12200 831093 dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) F:hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, dihydropyrimidinase activity;P:unknown;C:endomembrane system;OBMAFP S.X. H.G.
0.34 39.8 At3g22460 821817 OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity. S.X. H.G.
0.33 38.1 At1g21450 838743 SCL1 (SCARECROW-LIKE 1) Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. S.X. H.G.
0.33 38.1 At1g67310 843051 calmodulin binding / transcription regulator F:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cytosol;MOPFBV S.X. H.G.
0.33 38.1 At5g18640 831982 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;POFBMV S.X. H.G.
0.30 32.1 At1g67410 843061 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF S.X. H.G.
0.29 30.3 At1g30270 839907 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9. S.X. H.G.
0.29 30.3 At1g69270 843258 RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1) RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. S.X. H.G.
0.28 30.3 At1g69850 843321 ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2) Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.4 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
122.5 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
121.7 99.9 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
119.4 99.9 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
109.4 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
104.3 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
84.8 99.9 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
76.5 99.9 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.2 99.9 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
48.1 99.8 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 1e-30 135 At5g18770 831995 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 7e-4 46 At4g13985 827034 FBD1 (FBD-ASSOCIATED F-BOX PROTEIN) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 7e-4 46 At1g66300 842947 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 7e-4 46 At1g69630 843299 F-box family protein F:unknown;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 4e-2 40 At1g16930 838264 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-1 38 At4g36890 829842 IRX14 (irregular xylem 14) The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation. C.G. S.X.
0.01 2e-1 38 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.03 2e-1 38 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 2e-1 38 At1g13780 837938 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.16900.1.S1_at BE022916 - - 2e+0 At3g17460 PHD finger family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HF13D20r_at HF13D20r - - 2e-1 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
0.02 8e-2 40 Oryza sativa Os10g0429300 9638.m02507 - MATH domain containing protein 2e+0 At2g34870 MEE26 (maternal effect embryo arrest 26) C.G. S.X.
0.03 4e+0 34 Populus trichocarpa PtpAffx.216657.1.S1_at pmrna31586 hypothetical protein - 4e-1 At3g22630 PBD1 (20S PROTEASOME BETA SUBUNIT D1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.108454.1.S1_at CA688193 - - 1e+1 At5g07510 GRP14 C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1616667_a_at CB343534 similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766 - 7e-5 At5g65220 ribosomal protein L29 family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.2611.1.A1_a_at BM348249 hypothetical protein LOC100278318 - 3e-1 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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