CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g18760

Gene name zinc finger (C3HC4-type RING finger) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g18760 831994 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;MPFOV S.X. H.G.
0.75 86.9 At4g17370 827449 oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP S.X. H.G.
0.33 38.1 At2g01620 814691 MEE11 (maternal effect embryo arrest 11) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO S.X. H.G.
0.15 7.8 At2g20725 816602 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA S.X. H.G.
0.05 1.1 At1g50170 841439 ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B) encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.5 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.4 99.8 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.6 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
22.5 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.0 99.6 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
19.2 99.6 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.3 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.5 99.5 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.7 99.5 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.3 99.4 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 1e-39 165 At3g06330 819807 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV C.G. S.X.
0.02 2e-1 38 At5g15780 831434 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA C.G. S.X.
0.01 6e-1 36 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. C.G. S.X.
0.01 6e-1 36 At5g65240 836649 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 6e-1 36 At5g15020 831354 SNL2 (SIN3-LIKE 2) Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). C.G. S.X.
0.01 6e-1 36 At3g20540 821600 POLGAMMA1 (polymerase gamma 1) F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP C.G. S.X.
0.01 6e-1 36 At2g40620 818657 bZIP transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.61868.1.S1_at AW101706 - - 1e+0 At5g14440 - C.G. S.X.
0.03 1e+0 34 Hordeum vulgare EBpi01_SQ004_G05_at EBpi01_SQ004_G05 - - 5e-1 At5g18760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e+0 34 Oryza sativa OsAffx.10002.1.S1_at - - - 0 C.G. S.X.
0.15 1e-21 105 Populus trichocarpa Ptp.2307.1.S1_at CV270997 hypothetical protein - 2e-16 At3g06330 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.78490.1.S1_at CA731780 - - 7e-2 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.04 8e-4 44 Vitis vinifera 1622801_at CF403645 hypothetical protein LOC100259554 - 2e-5 At3g06330 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4307.1.A1_at BM333161 - - 1e+0 At4g03170 DNA binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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