CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g18690

Gene name AGP25 (ARABINOGALACTAN PROTEINS 25)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g18690 831987 AGP25 (ARABINOGALACTAN PROTEINS 25) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB S.X. H.G.
0.78 88.6 At2g44690 819077 ARAC9 A member of ROP GTPase gene family. S.X. H.G.
0.75 86.9 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA S.X. H.G.
0.73 85.5 At1g07880 837303 ATMPK13 member of MAP Kinase S.X. H.G.
0.71 84.2 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
0.61 76.7 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB S.X. H.G.
0.61 76.7 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA S.X. H.G.
0.53 68.6 At3g53540 824522 unknown protein F:unknown;P:unknown;C:plasma membrane;OMBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
328.7 100.0 E-MEXP-1797-raw-cel-1669768030
225.5 100.0 E-MEXP-1797-raw-cel-1669767985
217.4 100.0 E-MEXP-1797-raw-cel-1669767949
210.1 100.0 E-ATMX-31-raw-cel-1516947916
176.0 100.0 E-MEXP-1797-raw-cel-1669768075
170.5 100.0 E-MEXP-1797-raw-cel-1669768021
167.2 100.0 E-ATMX-31-raw-cel-1516947899
164.4 100.0 E-ATMX-31-raw-cel-1516947882
158.9 99.9 E-MEXP-1797-raw-cel-1669767940
156.9 99.9 E-MEXP-1797-raw-cel-1669767976
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 3e-6 52 At3g06360 819810 AGP27 Encodes an arabinogalactan-protein (AGP27). C.G. S.X.
0.04 3e-3 42 At3g50340 824196 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBFO C.G. S.X.
0.05 1e-2 40 At5g02570 831878 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleolus;MPOF C.G. S.X.
0.02 1e-2 40 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV C.G. S.X.
0.02 4e-2 38 At5g53500 835432 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.03 4e-2 38 At5g47680 834819 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.04 4e-2 38 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO C.G. S.X.
0.04 4e-2 38 At1g24450 839061 NFD2 (NUCLEAR FUSION DEFECTIVE 2) F:RNA binding, ribonuclease III activity;P:RNA processing;C:vacuole;BOPAM C.G. S.X.
0.02 2e-1 36 At5g62390 836360 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Glycine max HgAffx.15368.1.S1_at CB281626 - - 1e-1 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
0.04 3e-1 34 Hordeum vulgare HS03L15u_at HS03L15u - - 1e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
0.05 8e-2 38 Oryza sativa Os04g0469000 AK062816.1 - Heavy metal transport/detoxification proteindomain containing protein 1e+0 At3g52350 D111/G-patch domain-containing protein C.G. S.X.
0.06 6e-2 38 Populus trichocarpa PtpAffx.16418.1.S1_at DN495227 - - 4e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.06 2e-1 36 Triticum aestivum TaAffx.78140.1.S1_at CA737007 - - 2e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1620252_at CF568862 - - 4e-6 At5g48730 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 2e-2 38 Zea mays Zm.8701.1.A1_at BM268663 hypothetical protein LOC100192970 - 1e-1 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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