Gene omics information

Query gene ID At5g18570
Gene name GTP1/OBG family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVS.X.H.G.
1.00100.0At2g21195816656unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
1.00100.0At3g62330825406zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
1.00100.0At4g01570828133pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.9797.6At1g07970837312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBS.X.H.G.
0.9797.6At1g15080838072LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.S.X.H.G.
0.9797.6At2g38880818472NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.S.X.H.G.
0.9797.6At3g06790819864plastid developmental protein DAG, putativeF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.9797.6At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9797.6At2g36990818273SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
985.3100.0GSM133757Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.299.7GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.599.5GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.099.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At3g58050824974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.012e-242At2g41960818796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.017e-240At5g01020831918protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.017e-240At4g25800828685calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PBOC.G.S.X.
0.017e-240At3g42670823287CHR38 (CHROMATIN REMODELING 38)Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.C.G.S.X.
0.017e-240At1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOC.G.S.X.
0.013e-138At5g40550834053unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.013e-138At3g01080821213WRKY58member of WRKY Transcription Factor; Group IC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxHgAffx.13198.1.S1_atCB374785--1e-2At5g28630glycine-rich proteinC.G.S.X.
0.011e-138Hordeum vulgareHVSMEg0010K10r2_atHVSMEg0010K10r2--9e-1At5g52200unknown proteinC.G.S.X.
0.122e-1379Oryza sativaOs.9678.1.S1_at---0C.G.S.X.
0.406e-46186Populus trichocarpaPtpAffx.208558.1.S1_atpmrna16977hypothetical protein-3e-46At5g18570GTP1/OBG family proteinC.G.S.X.
0.023e-138Triticum aestivumTa.30368.1.A1_atCK205657--3e-1At5g59000zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e+034Vitis vinifera1606978_s_atCF207835hypothetical protein LOC100242245-5e-1At1g16680DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeC.G.S.X.
0.042e-344Zea maysZm.14813.1.S1_atBU098264--1e-3At5g18570GTP1/OBG family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
XGO:0009790The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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