CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g18570

Gene name GTP1/OBG family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
1.00 100.0 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
0.97 97.6 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.97 97.6 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
0.97 97.6 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. S.X. H.G.
0.97 97.6 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.97 97.6 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
985.3 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.2 99.7 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.5 99.6 E-MEXP-300-raw-cel-460515313
16.6 99.5 E-MEXP-300-raw-cel-460515037
16.5 99.5 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.3 99.5 E-MEXP-300-raw-cel-460515197
16.2 99.5 E-MEXP-300-raw-cel-460515255
14.8 99.4 E-MEXP-300-raw-cel-460515401
14.0 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.9 99.4 E-MEXP-300-raw-cel-460515357
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-3 46 At3g58050 824974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 2e-2 42 At2g41960 818796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 7e-2 40 At5g01020 831918 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 7e-2 40 At4g25800 828685 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.01 7e-2 40 At3g42670 823287 CHR38 (CHROMATIN REMODELING 38) Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. C.G. S.X.
0.01 7e-2 40 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.01 3e-1 38 At5g40550 834053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 3e-1 38 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max HgAffx.13198.1.S1_at CB374785 - - 1e-2 At5g28630 glycine-rich protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare HVSMEg0010K10r2_at HVSMEg0010K10r2 - - 9e-1 At5g52200 unknown protein C.G. S.X.
0.12 2e-13 79 Oryza sativa Os.9678.1.S1_at - - - 0 C.G. S.X.
0.40 6e-46 186 Populus trichocarpa PtpAffx.208558.1.S1_at pmrna16977 hypothetical protein - 3e-46 At5g18570 GTP1/OBG family protein C.G. S.X.
0.02 3e-1 38 Triticum aestivum Ta.30368.1.A1_at CK205657 - - 3e-1 At5g59000 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1606978_s_at CF207835 hypothetical protein LOC100242245 - 5e-1 At1g16680 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative C.G. S.X.
0.04 2e-3 44 Zea mays Zm.14813.1.S1_at BU098264 - - 1e-3 At5g18570 GTP1/OBG family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
X GO:0009790 The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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