Gene omics information

Query gene ID At5g18230
Gene name transcription regulator NOT2/NOT3/NOT5 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g18230831941transcription regulator NOT2/NOT3/NOT5 family proteinF:transcription regulator activity;P:negative regulation of transcription, regulation of transcription;C:nucleus;MOFBPVAS.X.H.G.
0.8693.1At3g21060821658transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFBOPAS.X.H.G.
0.6781.6At5g01270831743CPL2Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses.S.X.H.G.
0.5773.8At2g35530818118bZIP transcription factor family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent, transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MOPFBVAS.X.H.G.
0.2930.3At5g65720836701NFS1cysteine desulfurase whose activity is dependent on AtSufE activation.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
91.099.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
78.199.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
67.799.9GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
56.299.8GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
51.399.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
50.099.8GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
48.199.8GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
48.099.8GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
47.499.8GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
46.999.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-242At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.C.G.S.X.
0.018e-240At5g01990830729auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOBC.G.S.X.
0.013e-138At5g41570834159WRKY24member of WRKY Transcription Factor; Group II-cC.G.S.X.
0.013e-138At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.C.G.S.X.
0.013e-138At1g05230839256HDG2 (HOMEODOMAIN GLABROUS 2)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.126e-1997Glycine maxGma.1084.1.S1_a_atAW310048--1e-19At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.082e-1687Hordeum vulgareContig9815_atContig9815--2e-16At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.162e-25119Oryza sativaOs03g0652100AK102019.1-NOT2/NOT3/NOT5 family protein1e-25At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.313e-125450Populus trichocarpaPtpAffx.211075.1.S1_atpmrna21758hypothetical protein-3e-125At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.157e-21103Triticum aestivumTa.13594.1.S1_atCK202761--8e-21At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.085e-1995Vitis vinifera1618986_atBQ796459similar to Not CCR4-Not complex component, N-terminal; tRNA-binding arm-3e-19At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.049e-342Zea maysZm.9999.1.A1_atCF625760--7e-3At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0016481Any process that stops, prevents or reduces the frequency, rate or extent of transcription.
LGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
03018Link to KEGG PATHWAYRNA degradation
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