Gene omics information

Query gene ID At5g18100
Gene name CSD3 (copper/zinc superoxide dismutase 3)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At5g18100831928CSD3 (copper/zinc superoxide dismutase 3)A putative peroxisomal CuZnSOD inducible by a high-light pulse.S.X.H.G.
0.6378.1At4g33670829509L-galactose dehydrogenase (L-GalDH)Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesisS.X.H.G.
0.5974.7At4g40045830167unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.5368.6At5g66090836741unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast, chloroplast stroma;PBOS.X.H.G.
0.5267.4At4g08280826382-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFS.X.H.G.
0.4862.5At1g25290839113ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAS.X.H.G.
0.4253.9At2g35450818110catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMFS.X.H.G.
0.4152.4At4g09670826553oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPS.X.H.G.
0.4050.8At4g17040827412ATP-dependent Clp protease proteolytic subunit, putativeF:serine-type endopeptidase activity;P:proteolysis;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPMFVS.X.H.G.
0.4050.8At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.599.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
29.199.7GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.199.1GSM25316424h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
8.198.9GSM253195RGA-GR-MOCK-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible system
7.698.9GSM253194RGA-GR-DEX-REP1GSE10019Identification of RGA downstream genes by using steroid-inducible system
7.498.8GSM253156end of the night CGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
7.298.8GSM253198RGA-GR-DEX-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible system
6.798.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.106e-238At1g08830837405CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.C.G.S.X.
0.022e-136At5g10920830959argininosuccinate lyase, putative / arginosuccinase, putativeF:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFPC.G.S.X.
0.019e-134At5g63940836515protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.039e-134At4g38370829994phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFPAC.G.S.X.
0.029e-134At3g42550823265aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOC.G.S.X.
0.049e-134At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.C.G.S.X.
0.024e+032At5g43610834381ATSUC6 (Sucrose-proton symporter 6)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.182e-1273Glycine maxGma.15258.1.S1_atCD412753--2e-5At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.175e-1063Hordeum vulgareContig8063_s_atContig8063--2e-9At5g18100CSD3 (copper/zinc superoxide dismutase 3)C.G.S.X.
0.112e-654Oryza sativaOs07g0665200D01000.1--3e-14At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.382e-1273Populus trichocarpaPtp.140.1.S1_atAJ278671.1hypothetical protein-2e-12At5g18100CSD3 (copper/zinc superoxide dismutase 3)C.G.S.X.
0.064e-652Triticum aestivumTa.14644.2.S1_x_atBJ228287--3e-14At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.341e-1271Vitis vinifera1614776_a_atCA816959hypothetical protein LOC100260705-6e-12At5g18100CSD3 (copper/zinc superoxide dismutase 3)C.G.S.X.
0.245e-1373Zea maysZmAffx.114.1.A1_atAI665586--9e-13At5g18100CSD3 (copper/zinc superoxide dismutase 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
SGO:0019430Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
SGO:0006800The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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