CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g18100

Gene name CSD3 (copper/zinc superoxide dismutase 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g18100 831928 CSD3 (copper/zinc superoxide dismutase 3) A putative peroxisomal CuZnSOD inducible by a high-light pulse. S.X. H.G.
0.63 78.1 At4g33670 829509 L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis S.X. H.G.
0.59 74.7 At4g40045 830167 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.53 68.6 At5g66090 836741 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast, chloroplast stroma;PBO S.X. H.G.
0.52 67.4 At4g08280 826382 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPF S.X. H.G.
0.48 62.5 At1g25290 839113 ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.42 53.9 At2g35450 818110 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMF S.X. H.G.
0.41 52.4 At4g09670 826553 oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP S.X. H.G.
0.40 50.8 At4g17040 827412 ATP-dependent Clp protease proteolytic subunit, putative F:serine-type endopeptidase activity;P:proteolysis;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPMFV S.X. H.G.
0.40 50.8 At4g31040 829231 proton extrusion protein-related F:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.5 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
29.1 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.2 99.1 E-MEXP-509-raw-cel-829148842
9.1 99.1 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
8.1 98.9 GSM253195 RGA-GR-MOCK-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
8.0 98.9 E-MEXP-1799-raw-cel-1665601214
7.6 98.9 GSM253194 RGA-GR-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
7.4 98.8 GSM253156 end of the night C GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
7.2 98.8 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
6.7 98.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 6e-2 38 At1g08830 837405 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. C.G. S.X.
0.02 2e-1 36 At5g10920 830959 argininosuccinate lyase, putative / arginosuccinase, putative F:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFP C.G. S.X.
0.01 9e-1 34 At5g63940 836515 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.03 9e-1 34 At4g38370 829994 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFPA C.G. S.X.
0.02 9e-1 34 At3g42550 823265 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO C.G. S.X.
0.04 9e-1 34 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. C.G. S.X.
0.02 4e+0 32 At5g43610 834381 ATSUC6 (Sucrose-proton symporter 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-12 73 Glycine max Gma.15258.1.S1_at CD412753 - - 2e-5 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.17 5e-10 63 Hordeum vulgare Contig8063_s_at Contig8063 - - 2e-9 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
0.11 2e-6 54 Oryza sativa Os07g0665200 D01000.1 - - 3e-14 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.38 2e-12 73 Populus trichocarpa Ptp.140.1.S1_at AJ278671.1 hypothetical protein - 2e-12 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
0.06 4e-6 52 Triticum aestivum Ta.14644.2.S1_x_at BJ228287 - - 3e-14 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.34 1e-12 71 Vitis vinifera 1614776_a_at CA816959 hypothetical protein LOC100260705 - 6e-12 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
0.24 5e-13 73 Zea mays ZmAffx.114.1.A1_at AI665586 - - 9e-13 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
S GO:0019430 Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
S GO:0006800 The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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