Gene omics information

Query gene ID At5g17970
Gene name disease resistance protein (TIR-NBS-LRR class), putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g17970831664disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAVS.X.H.G.
0.6579.6At1g54720841913early-responsive to dehydration protein-related / ERD protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6478.9At5g53640835445F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.5974.7At2g29780817528kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVAFS.X.H.G.
0.5974.7At1g437153767310transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5873.8At1g36970840606-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.5873.8At4g037303770544transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5773.8At2g38590818441F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.5773.8At1g566753767473transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5773.8At3g266143768945transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
443.5100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
342.7100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
282.5100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
241.6100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
163.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
148.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
137.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
121.799.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
116.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.499.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.058e-1169At3g04220819577disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAVC.G.S.X.
0.045e-963At5g38340833816disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAVC.G.S.X.
0.073e-757At5g18360831954disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVC.G.S.X.
0.023e-757At4g16990827407RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMBC.G.S.X.
0.052e-552At5g49140834973disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOAFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGma.13835.1.A1_atCD407621--7e-1At4g17230SCL13 (Scarecrow-like 13)C.G.S.X.
0.016e-136Hordeum vulgareContig24694_atContig24694--4e-1At4g25280adenylate kinase family proteinC.G.S.X.
0.022e+036Oryza sativaOsAffx.2267.1.S1_at---0C.G.S.X.
0.033e-552Populus trichocarpaPtpAffx.225144.1.S1_s_atpmrna44277hypothetical protein-2e-1At4g16930disease resistance protein (TIR-NBS-LRR class), putativeC.G.S.X.
0.018e-240Triticum aestivumTa.7797.1.A1_atBQ160702--3e+0At1g17810BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)C.G.S.X.
0.032e-240Vitis vinifera1617873_atAY427106.1--1e+0At4g40010SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)C.G.S.X.
0.012e+034Zea maysZm.6605.1.A1_atAI444684hypothetical protein LOC100191572-3e+0At1g22470unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
LGO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
LGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
LGO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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