CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17950

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At2g37610 818338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.94 96.7 At2g01310 814659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.92 96.0 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
503.9 100.0 E-MEXP-509-raw-cel-829148525
430.4 100.0 E-MEXP-509-raw-cel-829148561
367.6 100.0 E-MEXP-509-raw-cel-829148597
292.4 100.0 E-MEXP-509-raw-cel-829148201
262.5 100.0 E-MEXP-509-raw-cel-829148165
246.3 100.0 E-MEXP-509-raw-cel-829148385
226.6 100.0 E-MEXP-509-raw-cel-829148420
180.5 100.0 E-MEXP-509-raw-cel-829148090
176.3 100.0 E-MEXP-509-raw-cel-829148348
173.2 100.0 E-MEXP-509-raw-cel-829148276
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-1 34 At3g16940 820950 calmodulin-binding protein F:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.01 7e-1 34 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. C.G. S.X.
0.02 3e+0 32 At2g27690 817315 CYP94C1 Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment. C.G. S.X.
0.01 3e+0 32 At2g32950 817857 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. C.G. S.X.
0.01 3e+0 32 At1g79640 844303 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 1e+1 30 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.03 1e+1 30 At5g14490 831300 anac085 (Arabidopsis NAC domain containing protein 85) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max HgAffx.16118.1.S1_at CB280238 - - 3e+0 At5g17950 unknown protein C.G. S.X.
0.06 1e+0 32 Hordeum vulgare HVSMEg0002C10r2_at HVSMEg0002C10r2 - - 1e+0 At5g17950 unknown protein C.G. S.X.
0.02 4e-4 46 Oryza sativa Os02g0708600 AK108743.1 - Nuclear protein SET domain containing protein 1e-3 At5g17950 unknown protein C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.218422.1.S1_at pmrna34029 hypothetical protein - 7e-8 At5g67060 HEC1 (HECATE 1) C.G. S.X.
0.07 3e+0 32 Triticum aestivum Ta.20198.1.S1_at CA674820 - - 7e-1 At1g61820 BGLU46 (BETA GLUCOSIDASE 46) C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1616510_at BQ800125 - - 1e+0 At1g67635 - C.G. S.X.
0.02 5e+0 30 Zea mays Zm.2272.1.A1_at BM347598 Autophagy-related 12 - 1e-5 At1g54210 ATG12A (AUTOPHAGY 12 A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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