Gene omics information

Query gene ID At5g17950
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g17950831662unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9897.8At1g23610838971unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9897.8At1g23910839002-F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
0.9697.3At4g02910828141unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9697.3At2g37610818338unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At5g12450831120-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9496.7At1g33000840195transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.9496.7At2g01310814659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9496.7At4g16930827401disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PS.X.H.G.
0.9296.0At1g65170842824ubiquitin carboxyl-terminal hydrolase family proteinF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMOS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-134At3g16940820950calmodulin-binding proteinF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.017e-134At1g53090841743SPA4 (SPA1-RELATED 4)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.C.G.S.X.
0.023e+032At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.C.G.S.X.
0.013e+032At2g32950817857COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.C.G.S.X.
0.013e+032At1g79640844303ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.011e+130At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.031e+130At5g14490831300anac085 (Arabidopsis NAC domain containing protein 85)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Glycine maxHgAffx.16118.1.S1_atCB280238--3e+0At5g17950unknown proteinC.G.S.X.
0.061e+032Hordeum vulgareHVSMEg0002C10r2_atHVSMEg0002C10r2--1e+0At5g17950unknown proteinC.G.S.X.
0.024e-446Oryza sativaOs02g0708600AK108743.1-Nuclear protein SET domain containing protein1e-3At5g17950unknown proteinC.G.S.X.
0.054e+032Populus trichocarpaPtpAffx.218422.1.S1_atpmrna34029hypothetical protein-7e-8At5g67060HEC1 (HECATE 1)C.G.S.X.
0.073e+032Triticum aestivumTa.20198.1.S1_atCA674820--7e-1At1g61820BGLU46 (BETA GLUCOSIDASE 46)C.G.S.X.
0.048e-132Vitis vinifera1616510_atBQ800125--1e+0At1g67635-C.G.S.X.
0.025e+030Zea maysZm.2272.1.A1_atBM347598Autophagy-related 12-1e-5At1g54210ATG12A (AUTOPHAGY 12 A)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage