CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17770

Gene name ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g17770 831645 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor. S.X. H.G.
0.57 73.8 At1g65930 842905 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NADP+) activity, copper ion binding;P:response to cadmium ion, response to salt stress, metabolic process;C:apoplast, plasma membrane;OBMPFA S.X. H.G.
0.48 62.5 At2g24765 817014 ARF3 (ADP-RIBOSYLATION FACTOR 3) GTPase required for Golgi targeting of GRIP domain proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner S.X. H.G.
0.48 62.5 At1g30630 839943 coatomer protein epsilon subunit family protein / COPE family protein F:protein transporter activity, protein binding, structural molecule activity, binding;P:retrograde vesicle-mediated transport, Golgi to ER;C:plasma membrane;MPFOBA S.X. H.G.
0.44 57.2 At2g29960 817546 CYP5 (CYCLOPHILIN 5) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo. S.X. H.G.
0.44 57.2 At2g36530 818226 LOS2 Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.42 53.9 At5g08080 830702 SYP132 (SYNTAXIN OF PLANTS 132) member of SYP13 Gene Family S.X. H.G.
0.42 53.9 At3g15610 820803 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.41 52.4 At5g04420 830321 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOPFBVA S.X. H.G.
0.38 46.7 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.2 99.4 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
15.0 99.4 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.5 99.4 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
13.8 99.4 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.5 99.4 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.4 99.4 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.2 99.3 GSM184495 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
10.4 99.2 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 36 At5g54180 835506 PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15) F:molecular_function unknown;P:biological_process unknown;C:plastid chromosome, chloroplast, nucleoid;PMO C.G. S.X.
0.02 4e-1 36 At4g37920 829948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;POBMA C.G. S.X.
0.03 4e-1 36 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g46510 834694 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
0.01 2e+0 34 At5g01460 831815 LMBR1 integral membrane family protein F:unknown;P:unknown;C:membrane;MOFP C.G. S.X.
0.01 2e+0 34 At5g02400 830937 PLL2 Encodes a protein with similarity to the POL locus which is a novel protein phosphatase 2C. Ubiquitously expressed. No phenotype observed in homozygous null mutant background. C.G. S.X.
0.01 2e+0 34 At4g14250 827066 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MFOPBA C.G. S.X.
0.02 2e+0 34 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.01 2e+0 34 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 1e-66 254 Glycine max GmaAffx.91300.1.S1_s_at CF805768 - - 9e-67 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.38 3e-25 115 Hordeum vulgare Contig7709_at Contig7709 - - 9e-25 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.37 7e-20 99 Oryza sativa Os05g0488900 AK071883.1 - Cytochrome b5 reductase 5e-20 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.57 2e-65 250 Populus trichocarpa Ptp.2560.1.S1_s_at CV270621 hypothetical protein - 1e-65 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.25 3e-11 69 Triticum aestivum Ta.27662.1.A1_at AY290735.1 - - 3e-11 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.47 7e-71 266 Vitis vinifera 1621689_at CF212507 hypothetical protein LOC100263819 - 3e-70 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
0.31 3e-18 91 Zea mays Zm.3964.1.A1_a_at AF205603.1 ferric-chelate reductase (NADH)2 - 1e-17 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00520 Amino sugar and nucleotide sugar metabolism
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