CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17650

Gene name glycine/proline-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA S.X. H.G.
0.29 30.3 At3g47780 823932 ATATH6 member of ATH subfamily S.X. H.G.
0.29 30.3 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA S.X. H.G.
0.29 30.3 At5g64310 836552 AGP1 (ARABINOGALACTAN PROTEIN 1) Encodes arabinogalactan-protein (AGP1). S.X. H.G.
0.25 22.6 At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA S.X. H.G.
0.09 2.8 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.08 2.3 At2g36950 818269 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
221.8 100.0 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
200.9 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
179.3 100.0 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
158.8 99.9 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
151.9 99.9 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
133.7 99.9 E-MEXP-1443-raw-cel-1581869515
111.5 99.9 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
109.4 99.9 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
109.4 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
96.8 99.9 GSM133815 Diamond_A-4-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 2e-8 59 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV C.G. S.X.
0.13 4e-6 52 At5g45350 834571 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBFOVA C.G. S.X.
0.10 4e-3 42 At4g19200 827660 proline-rich family protein F:unknown;P:unknown;C:unknown;MBPFOVA C.G. S.X.
0.01 2e-2 40 At3g20250 821569 APUM5 (Arabidopsis Pumilio 5) F:RNA binding, binding;P:unknown;C:vacuole;OFMPB C.G. S.X.
0.01 6e-2 38 At5g07760 830669 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVA C.G. S.X.
0.03 6e-2 38 At5g21280 832258 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.02 6e-2 38 At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. C.G. S.X.
0.02 6e-2 38 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 50 Glycine max Gma.3993.1.S1_at BG510822 - - 4e-5 At5g17650 glycine/proline-rich protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 8e-3 42 Oryza sativa OsAffx.466.1.S1_at - - - 0 C.G. S.X.
0.05 1e-3 44 Populus trichocarpa PtpAffx.10713.1.S1_at BU886282 hypothetical protein - 2e-3 At5g17650 glycine/proline-rich protein C.G. S.X.
0.07 7e-2 38 Triticum aestivum TaAffx.38102.1.S1_at BJ250052 - - 1e-1 At5g17650 glycine/proline-rich protein C.G. S.X.
0.04 1e-3 42 Vitis vinifera 1620137_s_at CB911784 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein C.G. S.X.
0.03 3e-2 38 Zea mays Zm.9569.1.A1_at AY103610.1 polyadenylate-binding protein 2 - 5e-7 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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