Gene omics information

Query gene ID At5g17490
Gene name RGL3 (RGA-LIKE PROTEIN 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionS.X.H.G.
0.6781.6At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.5065.3At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVS.X.H.G.
0.4659.8At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.S.X.H.G.
0.4050.8At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
216.7100.0GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
161.299.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
153.599.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
129.199.9GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
125.399.9E-MEXP-849-raw-cel-1181981038
115.099.9GSM173623Col-0 rep2GSE7227microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
96.599.9GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seeds
90.599.9E-MEXP-849-raw-cel-1181981014
88.599.9GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
87.099.9GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.529e-50198At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.C.G.S.X.
0.154e-1273At1g66350842953RGL1 (RGA-LIKE 1)Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.C.G.S.X.
0.133e-654At2g01570814686RGA1 (REPRESSOR OF GA1-3 1)Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.C.G.S.X.
0.025e-550At5g66770836810scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBFOC.G.S.X.
0.135e-550At1g14920838057GAI (GIBBERELLIC ACID INSENSITIVE)Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.C.G.S.X.
0.025e-240At1g05170839292galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOC.G.S.X.
0.012e-138At5g42940834306zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAC.G.S.X.
0.022e-138At4g26960828803unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-22107Glycine maxGma.13297.1.S1_atBE659955GAI2-2e-22At5g17490RGL3 (RGA-LIKE PROTEIN 3)C.G.S.X.
0.026e+032Hordeum vulgareHS04C17u_atHS04C17u--5e-1At4g30050unknown proteinC.G.S.X.
0.044e-138Oryza sativaOs02g07040759630.m04624--7e+0At2g39540gibberellin-regulated family proteinC.G.S.X.
0.101e-346Populus trichocarpaPtpAffx.5409.1.A1_a_atCV276111DELLA domain GRAS family transcription factor GAI/RGA1-3e-27At2g01570RGA1 (REPRESSOR OF GA1-3 1)C.G.S.X.
0.028e-136Triticum aestivumTaAffx.57792.1.S1_atCA625098--7e+0At5g25540CID6 (CTC-Interacting Domain 6)C.G.S.X.
0.111e-963Vitis vinifera1606777_s_atAF378125.1GAI1-8e-11At2g01570RGA1 (REPRESSOR OF GA1-3 1)C.G.S.X.
0.045e-342Zea maysZm.6402.2.A1_atAI855074Dwarf plant9-1e-2At5g17490RGL3 (RGA-LIKE PROTEIN 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009739A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
SGO:0009740A series of molecular signals mediated by the detection of gibberellic acid.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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