CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17470

Gene name calmodulin-related protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
0.92 96.0 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO S.X. H.G.
0.86 93.1 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB S.X. H.G.
0.86 93.1 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. S.X. H.G.
0.83 91.4 At4g37950 829951 lyase F:lyase activity;P:biological_process unknown;C:unknown;PFB S.X. H.G.
0.82 90.9 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At4g17160 827427 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1096.6 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
898.2 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
835.9 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
621.1 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
538.6 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
470.5 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
379.7 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
134.7 99.9 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
31.7 99.7 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
31.6 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 2e-41 169 At2g36180 818190 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.06 1e-5 50 At2g15680 816061 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB C.G. S.X.
0.21 1e-5 50 At1g66400 842958 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV C.G. S.X.
0.05 9e-4 44 At1g24620 839076 polcalcin, putative / calcium-binding pollen allergen, putative F:calcium ion binding;P:response to cold;C:nucleus;MFPOBV C.G. S.X.
0.09 1e-2 40 At5g37770 833755 TCH2 (TOUCH 2) Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). C.G. S.X.
0.04 1e-2 40 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. C.G. S.X.
0.03 5e-2 38 At5g11230 830993 organic anion transmembrane transporter F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Glycine max Gma.12658.1.A1_at CD393960 - - 3e+0 At5g49370 - C.G. S.X.
0.05 2e+0 32 Hordeum vulgare Contig20608_at Contig20608 - - 9e-3 At1g76040 CPK29 C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.8804.1.S1_at - - - 0 C.G. S.X.
0.05 7e-2 38 Populus trichocarpa PtpAffx.203193.1.S1_at pmrna6330 - - 7e-1 At5g17480 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.15699.1.A1_at CD492063 - - 2e+0 At5g17470 calmodulin-related protein, putative C.G. S.X.
0.05 4e+0 30 Vitis vinifera 1618907_x_at CF202612.1 - - 4e+0 At5g17470 calmodulin-related protein, putative C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.45.1.A1_at AI664925 amino acid permease - 8e-1 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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