Gene omics information

Query gene ID At5g17440
Gene name LUC7 N_terminus domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g17440831610LUC7 N_terminus domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.6176.7At4g21710828259NRPB2Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit.S.X.H.G.
0.5673.0At5g58130835925RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.4862.5At4g02720828193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPVAS.X.H.G.
0.4659.8At2g41500818748EMB2776Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.S.X.H.G.
0.4253.9At5g165053770617transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.4152.4At3g54540824619ATGCN4member of GCN subfamilyS.X.H.G.
0.4152.4At1g29350839809-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.4152.4At3g26560822264ATP-dependent RNA helicase, putativeF:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.199.7GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.599.7GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.299.7GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.299.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.299.6GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
15.899.5GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
13.699.4GSM284384Arabidopsis GEP5GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.999.3GSM142651MC002_ATH1_A10.2-dubos-wthGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.199.3GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.730936At3g03340821276UNE6 (unfertilized embryo sac 6)F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;MOFPBVAC.G.S.X.
0.014e-240At4g13300826960TPS13 (TERPENOID SYNTHASE 13)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.C.G.S.X.
0.012e-138At5g35450833508disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFAC.G.S.X.
0.012e-138At3g55100824676ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVC.G.S.X.
0.012e-138At2g32630817823pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.036e-136At5g432456240990unknown proteinF:unknown;P:unknown;C:endomembrane systemC.G.S.X.
0.026e-136At5g15930831450PAM1 (plant adhesion molecule 1)Encodes a putative plant adhesion molecule.C.G.S.X.
0.026e-136At5g06690830558WCRKC1 (WCRKC THIOREDOXIN 1)Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.291e-42174Glycine maxGma.17924.1.S1_atBM522947--5e-36At3g03340UNE6 (unfertilized embryo sac 6)C.G.S.X.
0.351e-25117Hordeum vulgareContig5159_atContig5159--1e-23At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.253e-23111Oryza sativaOs03g0843500AK067985.1-Sarcoplasmic reticulum protein (With alternativesplicing)3e-23At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.491e-36155Populus trichocarpaPtpAffx.212289.1.S1_atpmrna24091hypothetical protein-7e-37At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.095e-1479Triticum aestivumTaAffx.20414.1.S1_atBJ300688--2e-14At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.037e-134Vitis vinifera1613901_atCF510714hypothetical protein LOC100254714-2e-2At3g03340UNE6 (unfertilized embryo sac 6)C.G.S.X.
0.171e-24113Zea maysZm.5684.1.A1_atBM334571hypothetical protein LOC100273852-5e-24At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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