Gene omics information

Query gene ID At5g17420
Gene name IRX3 (IRREGULAR XYLEM 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).S.X.H.G.
0.9897.8At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.S.X.H.G.
0.9897.8At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9597.0At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9597.0At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFS.X.H.G.
0.9597.0At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.9597.0At4g28500828968ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;POS.X.H.G.
0.9597.0At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.S.X.H.G.
0.9396.4At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFS.X.H.G.
0.9396.4At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
324.3100.0GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterning
315.0100.0GSM133753Turner_A-7-Turne-WT-Base1_SLDGSE5729Role of COV in vascular patterning
224.3100.0E-MEXP-265-raw-cel-414618693
220.1100.0GSM131656ATGE_27_BGSE5633AtGenExpress: Developmental series (shoots and stems)
218.9100.0E-MEXP-265-raw-cel-414618585
207.3100.0E-MEXP-265-raw-cel-414618394
200.5100.0GSM131655ATGE_27_AGSE5633AtGenExpress: Developmental series (shoots and stems)
199.9100.0E-MEXP-265-raw-cel-414618491
182.3100.0GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
169.7100.0E-MEXP-265-raw-cel-414618291
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.241e-28129At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.C.G.S.X.
0.201e-22109At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.C.G.S.X.
0.268e-21103At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.C.G.S.X.
0.215e-1687At5g64740836595CESA6 (CELLULOSE SYNTHASE 6)Encodes a cellulose synthase isomer. CESA6 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA6, along with CESA1 and CESA3 are present in the same plasma membrane complex for cellulose biosynthesis. CESA2 and CESA5 are related to CESA6, having partially redundant roles.C.G.S.X.
0.202e-1585At5g09870830847CESA5 (CELLULOSE SYNTHASE 5)Encodes a cellulose synthase isomer, related to CESA6.C.G.S.X.
0.172e-1585At2g21770816713CESA9 (CELLULOSE SYNTHASE A9)cellulose synthase, related to CESA6.C.G.S.X.
0.207e-1583At4g32410829376CESA1 (CELLULOSE SYNTHASE 1)Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis.C.G.S.X.
0.161e-1379At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseC.G.S.X.
0.175e-1377At4g39350830090CESA2 (CELLULOSE SYNTHASE A2)Encodes a cellulose synthase isomer, related to CESA6.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.181e-29133Glycine maxGma.10796.2.S1_atCA935397--0At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)C.G.S.X.
0.194e-21103Hordeum vulgareContig3478_atContig3478--1e-115At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)C.G.S.X.
0.335e-33145Oryza sativaOs09g0422500AK121170.1-Cellulose synthase3e-33At5g17420IRX3 (IRREGULAR XYLEM 3)C.G.S.X.
0.672e-102375Populus trichocarpaPtpAffx.7454.1.S1_s_atAY095297.1cellulose synthase-2e-102At5g17420IRX3 (IRREGULAR XYLEM 3)C.G.S.X.
0.208e-1583Triticum aestivumTa.10214.2.S1_atBJ225413--1e-15At5g17420IRX3 (IRREGULAR XYLEM 3)C.G.S.X.
0.141e-26121Vitis vinifera1608897_atCB973221hypothetical protein LOC100241197-1e-36At5g44030CESA4 (CELLULOSE SYNTHASE A4)C.G.S.X.
0.351e-26121Zea maysZmAffx.5.1.S1_atAY372246.1cellulose synthase catalytic subunit 12-4e-26At5g17420IRX3 (IRREGULAR XYLEM 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010400The chemical reactions and pathways involving the side chains of the pectin, rhamnogalacturonan I.
XGO:0030244The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
XGO:0009832The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
XGO:0009834The chemical reactions and pathways resulting in the formation of inextensible cellulose and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00021Link to KaPPA-View 4Cellulose biosynthesis
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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