Gene omics information

Query gene ID At5g17330
Gene name GAD
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At5g17330831599GADEncodes one of two isoforms of glutamate decarboxylase.S.X.H.G.
0.7586.9At1g69810843317WRKY36member of WRKY Transcription Factor; Group II-bS.X.H.G.
0.7586.9At2g14100815896CYP705A13a member of the cytochrome P450 familyS.X.H.G.
0.4050.8At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVS.X.H.G.
0.3846.7At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
41.199.8GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
37.199.7GSM184511Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.799.7GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.699.7GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
34.699.7GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
33.499.7GSM218590Protoplasted root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
31.699.7GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
30.699.7GSM184536Protoplasted root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
30.299.7GSM184532Protoplasted root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
25.899.7GSM184491Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.452e-66254At2g02000814731GAD3 (glutamate decarboxylase 3)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAVC.G.S.X.
0.393e-65250At3g17760821044GAD5 (glutamate decarboxylase 5)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAVC.G.S.X.
0.504e-64246At2g02010814732GAD4 (glutamate decarboxylase 4)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cytosol, nucleus;BFPOMAVC.G.S.X.
0.446e-63242At1g65960842908GAD2 (GLUTAMATE DECARBOXYLASE 2)glutamate decarboxylase (GAD2)C.G.S.X.
0.259e-1685At3g17720821040pyridoxal-dependent decarboxylase family proteinF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOMC.G.S.X.
0.022e-138At5g61030836224GR-RBP3 (glycine-rich RNA-binding protein 3)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.C.G.S.X.
0.017e-136At1g59970842291matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:plasma membrane, anchored to membrane;MOPBVFAC.G.S.X.
0.013e+034At5g65420836667CYCD4Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.468e-48192Glycine maxGmaAffx.85890.1.S1_atBG044578--1e-66At3g17760GAD5 (glutamate decarboxylase 5)C.G.S.X.
0.394e-38159Hordeum vulgareContig17092_atContig17092--9e-38At5g17330GADC.G.S.X.
0.409e-76286Oryza sativaOs03g0720300AK120961.1-Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)7e-76At5g17330GADC.G.S.X.
0.577e-116418Populus trichocarpaPtpAffx.208836.1.S1_atpmrna17523hypothetical protein-5e-116At5g17330GADC.G.S.X.
0.312e-50200Triticum aestivumTaAffx.133491.1.S1_x_atBJ257599--9e-51At5g17330GADC.G.S.X.
0.506e-85313Vitis vinifera1607457_atCB341759hypothetical protein LOC100256481-2e-84At5g17330GADC.G.S.X.
0.263e-63242Zea maysZm.19066.1.S1_atCD975063--1e-37At2g02000GAD3 (glutamate decarboxylase 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00006Link to KaPPA-View 4Glutamine and glutamate metabolism/Nitrate assimilation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00250Link to KEGG PATHWAYAlanine, aspartate and glutamate metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00430Link to KEGG PATHWAYTaurine and hypotaurine metabolism
00650Link to KEGG PATHWAYButanoate metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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