CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17220

Gene name ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. S.X. H.G.
1.00 100.0 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF S.X. H.G.
1.00 100.0 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. S.X. H.G.
0.92 96.0 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. S.X. H.G.
0.92 96.0 At3g29590 822623 AT5MAT At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis. S.X. H.G.
0.92 96.0 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM S.X. H.G.
0.83 91.4 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO S.X. H.G.
0.80 89.8 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.3 99.9 E-ATMX-32-raw-cel-1562974409
157.6 99.9 E-ATMX-32-raw-cel-1562974621
157.5 99.9 GSM339544 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -6 GSE13469 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
148.5 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
145.9 99.9 GSM339546 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -8 GSE13469 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
142.9 99.9 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
140.3 99.9 GSM339540 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -2 GSE13469 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
133.5 99.9 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
126.8 99.9 E-ATMX-32-raw-cel-1562974595
122.7 99.9 E-MEXP-449-raw-cel-676423253
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 8e-36 151 At3g03190 821227 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 1e-9 63 At1g02920 839295 GSTF7 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 3e-7 56 At2g02930 814822 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.08 3e-7 56 At1g02930 839515 ATGSTF6 (GLUTATHIONE S-TRANSFERASE) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.07 8e-5 48 At4g02520 827931 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. C.G. S.X.
0.01 1e+0 34 At5g64550 836576 loricrin-related F:molecular_function unknown;P:unknown;C:unknown;MPOBFV C.G. S.X.
0.02 1e+0 34 At5g49070 834966 KCS21 (3-KETOACYL-COA SYNTHASE 21) Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.03 1e+0 34 At3g54560 824621 HTA11 Encodes HTA11, a histone H2A protein. C.G. S.X.
0.01 1e+0 34 At3g47950 823950 AHA4 mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Glycine max GmaAffx.79635.1.S1_s_at AW507663 - - 2e-2 At5g17220 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEl0009L02r2_at HVSMEl0009L02r2 - - 8e-2 At5g55970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa Os03g0206400 AK066494.1 - Conserved hypothetical protein 1e+0 At5g17220 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) C.G. S.X.
0.04 2e-3 44 Populus trichocarpa PtpAffx.221547.1.S1_at pmrna38483 hypothetical protein - 1e+0 At3g03190 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.56674.1.S1_at CA646868 - - 3e+0 At2g07724 unknown protein C.G. S.X.
0.04 1e-4 46 Vitis vinifera 1616933_at CB345010 hypothetical protein LOC100265903 - 1e-13 At1g02920 GSTF7 C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9415.1.A1_at BM341676 - - 7e-2 At5g01075 beta-galactosidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009407 The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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