CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g17200

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.84 91.9 At5g17200 831584 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA S.X. H.G.
0.73 85.5 At3g24640 822060 lyase F:lyase activity;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At1g67635 843087 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.70 83.5 At1g69540 843289 AGL94 (AGAMOUS-LIKE 94) Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. S.X. H.G.
0.67 81.6 At2g06020 815156 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO S.X. H.G.
0.67 81.6 At5g41380 834140 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF S.X. H.G.
0.64 78.9 At3g14820 820711 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.63 78.1 At1g51990 841628 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM S.X. H.G.
0.63 78.1 At2g36040 818177 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.59 74.7 At3g16600 820911 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 6 functions;P:unknown;C:unknown;MFBOPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
214.4 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
213.7 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
207.9 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.1 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
188.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
183.0 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
181.5 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
169.8 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
169.3 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.9 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. C.G. S.X.
0.04 2e-1 38 At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA C.G. S.X.
0.01 6e-1 36 At5g14620 831315 DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues. C.G. S.X.
0.03 6e-1 36 At4g18180 827543 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.03 6e-1 36 At3g57510 824918 ADPG1 Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. C.G. S.X.
0.01 6e-1 36 At1g35910 840493 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA C.G. S.X.
0.02 3e+0 34 At5g27530 832813 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMVA C.G. S.X.
0.01 3e+0 34 At5g46070 834648 GTP binding / GTPase F:GTP binding, GTPase activity;P:immune response;C:nucleolus, chloroplast;MOBFPAV C.G. S.X.
0.03 3e+0 34 At4g32370 829371 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max PsAffx.psMA012xI02f_at PsAffx.psMA012xI02f - - 1e-2 At5g67270 ATEB1C (microtubule end binding protein 1) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare rbah29m06_s_at rbah29m06 - - 4e-1 At1g54050 17.4 kDa class III heat shock protein (HSP17.4-CIII) C.G. S.X.
0.02 5e+0 34 Oryza sativa Os06g0131100 CA760465 - WD40-like domain containing protein 2e+0 At5g43510 - C.G. S.X.
0.05 1e-2 42 Populus trichocarpa PtpAffx.218374.1.S1_at pmrna33961 hypothetical protein - 6e-4 At4g32380 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum Ta.14961.1.S1_at CA685726 - - 2e+0 At3g27090 - C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1614217_at CK138191.1 hypothetical protein LOC100254189 - 4e+0 Atmg00650 - C.G. S.X.
0.02 3e-1 36 Zea mays Zm.6580.2.A1_a_at AI619113 succinyl-CoA ligase beta-chain /// succinyl-CoA ligase beta-chain - 4e-22 At2g20420 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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