CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16910

Gene name CSLD2 (CELLULOSE-SYNTHASE LIKE D2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.09 2.8 At5g16910 831554 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) encodes a gene similar to cellulose synthase. Located in golgi membranes. S.X. H.G.
0.12 4.9 At3g52470 824412 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.11 4.1 At4g39270 830083 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.10 3.4 At2g30490 817599 C4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. S.X. H.G.
0.09 2.8 At3g01720 821091 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.2 99.8 E-MEXP-98-raw-cel-320188804
51.1 99.8 E-MEXP-98-raw-cel-320189024
41.0 99.8 E-MEXP-98-raw-cel-320188859
34.5 99.7 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
32.7 99.7 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
29.5 99.7 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.5 99.7 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
28.3 99.7 E-MEXP-98-raw-cel-320189079
27.1 99.7 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
26.4 99.7 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 0 961 At3g03050 821148 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. C.G. S.X.
0.23 2e-31 139 At2g33100 817872 ATCSLD1 encodes a gene similar to cellulose synthase C.G. S.X.
0.22 1e-29 133 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. C.G. S.X.
0.19 1e-26 123 At4g38190 829975 ATCSLD4 encodes a gene similar to cellulose synthase C.G. S.X.
0.17 9e-21 103 At1g32180 840110 ATCSLD6 encodes a gene similar to cellulose synthase C.G. S.X.
0.05 3e-11 71 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. C.G. S.X.
0.04 5e-10 67 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.06 5e-10 67 At4g39350 830090 CESA2 (CELLULOSE SYNTHASE A2) Encodes a cellulose synthase isomer, related to CESA6. C.G. S.X.
0.09 5e-10 67 At2g21770 816713 CESA9 (CELLULOSE SYNTHASE A9) cellulose synthase, related to CESA6. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 4e-104 381 Glycine max GmaAffx.85298.1.S1_at BM085417 - - 7e-105 At5g16910 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) C.G. S.X.
0.06 1e-2 42 Hordeum vulgare Contig4451_s_at Contig4451 - - 4e-68 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.35 2e-48 196 Oryza sativa Os06g0111800 AK105393.1 - CSLD2 (Fragment) 3e-64 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
0.54 6e-78 293 Populus trichocarpa PtpAffx.145558.1.S1_a_at AY162184.1 cellulose synthase-like protein - 6e-99 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
0.21 1e-32 143 Triticum aestivum Ta.9118.1.S1_at CK194966 - - 4e-22 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
0.03 1e-4 48 Vitis vinifera 1607189_at CF405205 hypothetical protein LOC100261385 - 2e-2 At4g38190 ATCSLD4 C.G. S.X.
0.13 1e-20 101 Zea mays Zm.13138.1.S1_at CA404833 - - 5e-14 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0048767 The process by which the root hair grows longer.
C GO:0000271 The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.
C GO:0009832 The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00021 Cellulose biosynthesis
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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