CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16630

Gene name RAD4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g16630 831525 RAD4 F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP S.X. H.G.
0.95 97.0 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane–localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. S.X. H.G.
0.95 97.0 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. S.X. H.G.
0.94 96.7 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P S.X. H.G.
0.94 96.7 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB S.X. H.G.
0.93 96.4 At1g77410 844078 BGAL16 (beta-galactosidase 16) F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA S.X. H.G.
0.93 96.4 At4g39753 830132 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF S.X. H.G.
0.93 96.4 At2g06040 815159 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.92 96.0 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1127.6 100.0 E-ATMX-35-raw-cel-1574334800
1015.5 100.0 E-ATMX-35-raw-cel-1574334816
886.8 100.0 E-ATMX-35-raw-cel-1574334832
40.8 99.8 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
28.5 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
22.3 99.6 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
21.9 99.6 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.0 99.4 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
12.7 99.3 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.3 99.3 E-ATMX-35-raw-cel-1574334880
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At5g11390 831010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 3e-1 38 At4g00380 828016 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 3e-1 38 At3g11760 820349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At1g15910 838161 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 1e+0 36 At5g36900 833657 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.01 1e+0 36 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 1e+0 36 At5g65770 836706 LINC4 (LITTLE NUCLEI4) F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 1e+0 36 At4g01160 828156 BTB/POZ domain-containing protein F:protein binding;P:unknown;C:cellular_component unknown;MOPVF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max Gma.4746.1.A1_s_at CD404836 - - 3e+0 At4g31270 transcription factor C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig21667_at Contig21667 - - 2e-1 At5g22930 unknown protein C.G. S.X.
0.04 3e-6 56 Oryza sativa Os08g0427500 AK102608.1 - DNA repair protein Rad4 family protein 2e-6 At5g16630 RAD4 C.G. S.X.
0.14 3e-11 71 Populus trichocarpa PtpAffx.203979.1.S1_at pmrna7849 hypothetical protein - 2e-11 At5g16630 RAD4 C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.80229.1.S1_at CA680885 - - 1e+0 At3g29170 unknown protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1622645_at CF208259 hypothetical protein LOC100245405 - 1e-83 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) C.G. S.X.
0.01 6e-1 36 Zea mays Zm.2751.1.A1_at AI834656 hypothetical protein LOC100191655 - 5e+0 At3g53630 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006289 A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03420 Nucleotide excision repair
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