Gene omics information

Query gene ID At5g16560
Gene name KAN (KANADI)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g16560831518KAN (KANADI)Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.S.X.H.G.
0.146.8At1g53710841809hydrolase/ protein serine/threonine phosphataseF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MFPBOAS.X.H.G.
0.030.6At5g11350831006endonuclease/exonuclease/phosphatase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPFOBVS.X.H.G.
0.010.2At3g02130821240RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:lignin metabolic process, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, pollen maturation, anther dehiscence;C:plasma membrane;MPOBFVAS.X.H.G.
0.010.2At1g60670842361-F:unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.000.0At1g30200839900F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
115.199.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
113.199.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.999.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.899.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
109.199.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
96.899.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.499.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.999.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
92.399.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
89.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.121e-1791At1g32240840116KAN2 (KANADI 2)Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.C.G.S.X.
0.096e-756At5g42630834270ATS (ABERRANT TESTA SHAPE)Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.C.G.S.X.
0.084e-550At4g17695827490KAN3 (KANADI 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.022e-344At5g18910832009protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVAC.G.S.X.
0.032e-344At2g42660818866myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.021e-242At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFC.G.S.X.
0.024e-240At5g37420833718AGL105F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.034e-240At2g38790818461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.244e-46186Glycine maxGmaAffx.84774.1.S1_atAW394807--2e-46At5g16560KAN (KANADI)C.G.S.X.
0.021e+034Hordeum vulgareContig13359_atContig13359--4e-10At1g11240unknown proteinC.G.S.X.
0.115e-654Oryza sativaOs09g03953009637.m01977-Myb, DNA-binding domain containing protein3e-6At5g16560KAN (KANADI)C.G.S.X.
0.222e-47190Populus trichocarpaPtpAffx.204002.1.S1_atpmrna7891hypothetical protein-2e-47At5g16560KAN (KANADI)C.G.S.X.
0.023e-344Triticum aestivumTa.6889.1.S1_atBJ273342MYB transcription factor-6e-1At2g01060myb family transcription factorC.G.S.X.
0.033e+032Vitis vinifera1618732_atBQ792959--2e-8At3g49140-C.G.S.X.
0.024e-342Zea maysZm.13714.1.S1_atCF245179hypothetical protein LOC100272524-1e-14At2g01060myb family transcription factorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009943The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
XGO:0009944The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
XGO:0009887Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
XGO:0009956The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
XGO:0010051The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
XGO:0010158Process by which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
XGO:0048440The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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