CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16480

Gene name tyrosine specific protein phosphatase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At5g16480 831509 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM S.X. H.G.
0.76 87.4 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.69 82.9 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
0.69 82.9 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
0.69 82.9 At5g61960 836317 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. S.X. H.G.
0.67 81.6 At2g19880 816507 ceramide glucosyltransferase, putative F:ceramide glucosyltransferase activity;P:biological_process unknown;C:endomembrane system;MBPFAO S.X. H.G.
0.67 81.6 At3g51770 824340 ETO1 (ETHYLENE OVERPRODUCER 1) Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS S.X. H.G.
0.67 81.6 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.61 76.7 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO S.X. H.G.
0.60 75.7 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.9 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
114.6 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
108.5 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
90.7 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
69.2 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
68.5 99.9 E-MEXP-1138-raw-cel-1432773354
63.7 99.8 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
63.4 99.8 E-MEXP-1138-raw-cel-1432773066
62.3 99.8 E-MEXP-1138-raw-cel-1432773226
58.1 99.8 E-MEXP-1138-raw-cel-1432773290
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 2e-88 325 At3g02800 821239 phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM C.G. S.X.
0.14 1e-6 54 At1g05000 839348 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM C.G. S.X.
0.03 5e-3 42 At5g01440 831886 insulin-degrading enzyme-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB C.G. S.X.
0.04 8e-2 38 At1g50470 841469 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.04 3e-1 36 At4g03960 825706 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM C.G. S.X.
0.02 1e+0 34 At5g33300 833303 chromosome-associated kinesin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 1e+0 34 At5g41240 834125 ATGSTT2 (GLUTATHIONE S-TRANSFERASE THETA 2) Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.01 1e+0 34 At5g41220 834124 ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3) Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.01 1e+0 34 At4g11270 826729 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOP C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-3 44 Glycine max Gma.6942.1.S1_at BE802944 - - 4e-14 At1g05000 tyrosine specific protein phosphatase family protein C.G. S.X.
0.02 2e+0 32 Hordeum vulgare Contig13714_at Contig13714 - - 6e-4 At2g27360 lipase, putative C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.19135.1.S1_at - - - 0 C.G. S.X.
0.25 5e-13 75 Populus trichocarpa PtpAffx.31038.1.A1_at CV257453 hypothetical protein - 1e-13 At3g02800 phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.113279.1.S1_at CA616645 - - 2e-51 At1g15690 AVP1 C.G. S.X.
0.07 4e-7 54 Vitis vinifera 1616719_at CF204819.1 - - 6e-9 At3g02800 phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase C.G. S.X.
0.03 8e-3 40 Zea mays Zm.4036.1.A1_at CD994340 tyrosine specific protein phosphatase family protein - 1e-11 At1g05000 tyrosine specific protein phosphatase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016311 The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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