CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16440

Gene name IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g16440 831505 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway. S.X. H.G.
0.57 73.8 At1g10630 837606 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
0.40 50.8 At5g63510 836470 GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. S.X. H.G.
0.35 41.6 At5g63400 836459 ADK1 (ADENYLATE KINASE 1) encodes a protein similar to adenylate kinase. S.X. H.G.
0.26 24.4 At5g58030 835915 transport protein particle (TRAPP) component Bet3 family protein F:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOP S.X. H.G.
0.18 11.4 At5g13450 831186 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
151.8 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
142.3 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
41.5 99.8 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
39.0 99.8 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
38.4 99.8 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
36.9 99.7 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
33.9 99.7 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
33.0 99.7 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
25.6 99.7 GSM67084 Arabidopsis_Stigma01 GSE3056 Arabidopsis Pollination Study
25.2 99.6 GSM67078 Arabidopsis_Ovary01 GSE3056 Arabidopsis Pollination Study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 781 At3g02780 820960 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2) Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway. C.G. S.X.
0.01 4e-1 36 At5g64070 836528 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350. Interacts with the RabA4b GTPase. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs. C.G. S.X.
0.01 4e-1 36 At4g19610 827703 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBAV C.G. S.X.
0.01 4e-1 36 At3g13860 820599 HSP60-3A (HEAT SHOCK PROTEIN 60-3A) F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV C.G. S.X.
0.03 4e-1 36 At1g78790 844215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.03 4e-1 36 At1g28540 839754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g46330 834676 FLS2 (FLAGELLIN-SENSITIVE 2) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. C.G. S.X.
0.01 2e+0 34 At5g11560 831028 catalytic F:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 5e-97 355 Glycine max GmaAffx.90487.1.S1_at CF809036 - - 4e-97 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.31 2e-29 129 Hordeum vulgare Contig4893_at Contig4893 - - 2e-25 At3g02780 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2) C.G. S.X.
0.30 2e-32 141 Oryza sativa Os07g0546000 AK065871.1 - Isopentenyl pyrophosphate:dimethyllallylpyrophosphate isomerase (EC 5.3.3.2) (Fragment) 1e-32 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.48 6e-38 159 Populus trichocarpa Ptp.6945.1.S1_at CV282639 hypothetical protein - 6e-38 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.29 9e-18 91 Triticum aestivum Ta.23248.1.S1_at CD373747 - - 1e-17 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.51 6e-87 319 Vitis vinifera 1606675_at CB006583 hypothetical protein LOC100241072 - 1e-97 At3g02780 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2) C.G. S.X.
0.30 2e-35 149 Zea mays Zm.16794.1.A1_at AF330034.1 isopentenyl pyrophosphate isomerase - 7e-35 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009240 The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
S GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
S GO:0015995 The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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