Gene omics information

Query gene ID At5g16440
Gene name IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g16440831505IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.S.X.H.G.
0.5773.8At1g10630837606ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.S.X.H.G.
0.4050.8At5g63510836470GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.S.X.H.G.
0.3541.6At5g63400836459ADK1 (ADENYLATE KINASE 1)encodes a protein similar to adenylate kinase.S.X.H.G.
0.2624.4At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPS.X.H.G.
0.1811.4At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
151.899.9GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
142.399.9GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
41.599.8GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
39.099.8GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
38.499.8GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
36.999.7GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
33.999.7GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
33.099.7GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
25.699.7GSM67084Arabidopsis_Stigma01GSE3056Arabidopsis Pollination Study
25.299.6GSM67078Arabidopsis_Ovary01GSE3056Arabidopsis Pollination Study
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.720781At3g02780820960IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.C.G.S.X.
0.014e-136At5g64070836528PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350. Interacts with the RabA4b GTPase. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs.C.G.S.X.
0.014e-136At4g19610827703RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBAVC.G.S.X.
0.014e-136At3g13860820599HSP60-3A (HEAT SHOCK PROTEIN 60-3A)F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAVC.G.S.X.
0.034e-136At1g78790844215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.034e-136At1g28540839754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.C.G.S.X.
0.012e+034At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.545e-97355Glycine maxGmaAffx.90487.1.S1_atCF809036--4e-97At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)C.G.S.X.
0.312e-29129Hordeum vulgareContig4893_atContig4893--2e-25At3g02780IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)C.G.S.X.
0.302e-32141Oryza sativaOs07g0546000AK065871.1-Isopentenyl pyrophosphate:dimethyllallylpyrophosphate isomerase (EC 5.3.3.2) (Fragment)1e-32At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)C.G.S.X.
0.486e-38159Populus trichocarpaPtp.6945.1.S1_atCV282639hypothetical protein-6e-38At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)C.G.S.X.
0.299e-1891Triticum aestivumTa.23248.1.S1_atCD373747--1e-17At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)C.G.S.X.
0.516e-87319Vitis vinifera1606675_atCB006583hypothetical protein LOC100241072-1e-97At3g02780IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)C.G.S.X.
0.302e-35149Zea maysZm.16794.1.A1_atAF330034.1isopentenyl pyrophosphate isomerase-7e-35At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009240The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.
SGO:0008299The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
SGO:0015995The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00900Link to KEGG PATHWAYTerpenoid backbone biosynthesis
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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