CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16390

Gene name CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g16390 831500 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex. S.X. H.G.
1.00 100.0 At5g46290 834671 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, S.X. H.G.
0.89 94.6 At3g25860 822181 LTA2 Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. S.X. H.G.
0.80 89.8 At1g01090 839429 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) pyruvate dehydrogenase E1 alpha subunit S.X. H.G.
0.60 75.7 At5g35360 833497 CAC2 Encodes biotin carboxylase subunit (CAC2). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.8 GSM305284 estradiol induced, biological replicate 2 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
6.0 98.5 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
5.8 98.4 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
5.6 98.4 GSM226274 YHB_Dark_replicate2 GSE8951 A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
5.5 98.3 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
5.4 98.3 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
5.3 98.3 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
5.3 98.3 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
5.2 98.2 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
5.2 98.2 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At3g08600 820007 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PB C.G. S.X.
0.08 1e-1 38 At5g15530 831406 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA, C.G. S.X.
0.02 1e-1 38 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA C.G. S.X.
0.02 1e-1 38 At1g72370 843569 P40 acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. C.G. S.X.
0.02 2e+0 34 At5g05800 830465 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 2e+0 34 At5g11560 831028 catalytic F:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-34 145 Glycine max Gma.12.1.S1_at U40666.1 biotin carboxyl carrier protein precursor - 9e-34 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig18687_at Contig18687 - - 2e-2 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.02 1e-2 42 Oryza sativa Os06g0321700 AK109831.1 - Hypothetical protein 4e-2 At3g58710 WRKY69 C.G. S.X.
0.22 8e-25 115 Populus trichocarpa PtpAffx.49222.1.S1_at BP930894 hypothetical protein - 9e-25 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.3318.1.S1_x_at CA692573 - - 3e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.17 5e-7 54 Vitis vinifera 1622079_at CD801631 hypothetical protein LOC100266760 - 1e-6 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 4e-2 38 Zea mays Zm.11866.1.A1_at CF002341 hypothetical protein LOC100275438 - 2e+0 At5g49050 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00016 Fatty acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00061 Fatty acid biosynthesis
00620 Pyruvate metabolism
00640 Propanoate metabolism
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