Gene omics information

Query gene ID At5g16390
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g16390831500CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.S.X.H.G.
1.00100.0At5g46290834671KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,S.X.H.G.
0.8994.6At3g25860822181LTA2Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.S.X.H.G.
0.8089.8At1g01090839429PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)pyruvate dehydrogenase E1 alpha subunitS.X.H.G.
0.6075.7At5g35360833497CAC2Encodes biotin carboxylase subunit (CAC2).S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.498.8GSM305284estradiol induced, biological replicate 2GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
6.098.5GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
5.898.4GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
5.698.4GSM226274YHB_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
5.598.3GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
5.498.3GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
5.398.3GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
5.398.3GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
5.298.2GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
5.298.2GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-240At3g08600820007unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PBC.G.S.X.
0.081e-138At5g15530831406BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,C.G.S.X.
0.021e-138At3g07720819963kelch repeat-containing proteinF:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVAC.G.S.X.
0.021e-138At1g72370843569P40acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.C.G.S.X.
0.022e+034At5g05800830465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.012e+034At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.179e-34145Glycine maxGma.12.1.S1_atU40666.1biotin carboxyl carrier protein precursor-9e-34At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)C.G.S.X.
0.031e-240Hordeum vulgareContig18687_atContig18687--2e-2At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)C.G.S.X.
0.021e-242Oryza sativaOs06g0321700AK109831.1-Hypothetical protein4e-2At3g58710WRKY69C.G.S.X.
0.228e-25115Populus trichocarpaPtpAffx.49222.1.S1_atBP930894hypothetical protein-9e-25At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)C.G.S.X.
0.031e-138Triticum aestivumTa.3318.1.S1_x_atCA692573--3e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)C.G.S.X.
0.175e-754Vitis vinifera1622079_atCD801631hypothetical protein LOC100266760-1e-6At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)C.G.S.X.
0.034e-238Zea maysZm.11866.1.A1_atCF002341hypothetical protein LOC100275438-2e+0At5g49050-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00016Link to KaPPA-View 4Fatty acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00061Link to KEGG PATHWAYFatty acid biosynthesis
00620Link to KEGG PATHWAYPyruvate metabolism
00640Link to KEGG PATHWAYPropanoate metabolism
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