CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16250

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
0.78 88.6 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.74 86.1 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.71 84.2 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. S.X. H.G.
0.67 81.6 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.67 81.6 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.67 81.6 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. S.X. H.G.
0.67 81.6 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.9 99.7 E-MEXP-1360-raw-cel-1561600622
25.6 99.7 E-MEXP-1797-raw-cel-1669767976
23.6 99.6 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.8 99.6 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.4 99.6 GSM131667 ATGE_47_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.1 99.6 E-MEXP-1797-raw-cel-1669767958
21.1 99.6 E-TABM-19-raw-cel-489757506
21.1 99.6 GSM133931 Weigel_2-23_CHIP-210-B_Rep2_ATH1 GSE5746 FRI FLC combos
20.8 99.6 E-TABM-19-raw-cel-489757488
20.8 99.6 GSM133930 Weigel_2-22_CHIP-210-A_Rep1_ATH1 GSE5746 FRI FLC combos
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 3e-75 282 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.22 2e-11 69 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.22 2e-11 69 At5g36800 833647 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P C.G. S.X.
0.02 2e-2 40 At4g32980 829435 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. C.G. S.X.
0.01 7e-2 38 At4g19220 827662 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.02 3e-1 36 At5g01980 831911 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
0.02 3e-1 36 At4g19660 827710 NPR4 (NPR1-like protein 4) Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. C.G. S.X.
0.02 3e-1 36 At4g35230 829676 BSK1 (BR-SIGNALING KINASE 1) Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-3 44 Glycine max GmaAffx.82528.1.S1_at CA800460 - - 5e-9 At3g02640 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig23542_at Contig23542 - - 7e-2 At4g31360 selenium binding C.G. S.X.
0.11 1e-1 38 Oryza sativa Os05g0507000 AK108025.1 - - 2e+0 At2g11005 glycine-rich protein C.G. S.X.
0.14 2e-6 54 Populus trichocarpa PtpAffx.44301.1.A1_s_at CV237484 hypothetical protein - 3e-5 At3g02640 unknown protein C.G. S.X.
0.05 7e-2 38 Triticum aestivum Ta.30515.1.S1_at CK216250 - - 1e-1 At5g16250 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.440.1.A1_at AI676978 - - 2e-4 At1g54410 dehydrin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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