Gene omics information

Query gene ID At5g16250
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g16250831485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8089.8At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPS.X.H.G.
0.7888.6At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.7486.1At3g12870820470unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.7184.2At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.S.X.H.G.
0.6781.6At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.S.X.H.G.
0.6781.6At1g76310843964CYCB2core cell cycle genesS.X.H.G.
0.6781.6At1g76540843987CDKB2Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.S.X.H.G.
0.6781.6At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.699.6GSM131665ATGE_46_BGSE5633AtGenExpress: Developmental series (shoots and stems)
22.899.6GSM131661ATGE_29_A2GSE5633AtGenExpress: Developmental series (shoots and stems)
22.499.6GSM131667ATGE_47_AGSE5633AtGenExpress: Developmental series (shoots and stems)
21.199.6GSM133931Weigel_2-23_CHIP-210-B_Rep2_ATH1GSE5746FRI FLC combos
20.899.6GSM133930Weigel_2-22_CHIP-210-A_Rep1_ATH1GSE5746FRI FLC combos
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.643e-75282At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POC.G.S.X.
0.222e-1169At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.222e-1169At5g36800833647unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PC.G.S.X.
0.022e-240At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.C.G.S.X.
0.017e-238At4g19220827662pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.023e-136At5g01980831911zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBC.G.S.X.
0.023e-136At4g19660827710NPR4 (NPR1-like protein 4)Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.C.G.S.X.
0.023e-136At4g35230829676BSK1 (BR-SIGNALING KINASE 1)Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-344Glycine maxGmaAffx.82528.1.S1_atCA800460--5e-9At3g02640unknown proteinC.G.S.X.
0.042e+032Hordeum vulgareContig23542_atContig23542--7e-2At4g31360selenium bindingC.G.S.X.
0.111e-138Oryza sativaOs05g0507000AK108025.1--2e+0At2g11005glycine-rich proteinC.G.S.X.
0.142e-654Populus trichocarpaPtpAffx.44301.1.A1_s_atCV237484hypothetical protein-3e-5At3g02640unknown proteinC.G.S.X.
0.057e-238Triticum aestivumTa.30515.1.S1_atCK216250--1e-1At5g16250unknown proteinC.G.S.X.
0.041e+032Vitis vinifera1619942_atCF568925--3e+0At3g57370transcription factor IIB (TFIIB) family proteinC.G.S.X.
0.032e+032Zea maysZmAffx.440.1.A1_atAI676978--2e-4At1g54410dehydrin family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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