CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g16070

Gene name chaperonin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g16070 831464 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
0.60 75.7 At2g46280 819236 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase S.X. H.G.
0.52 67.4 At1g24510 839066 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPA S.X. H.G.
0.52 67.4 At3g20050 821544 ATTCP-1 Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). S.X. H.G.
0.50 65.3 At3g02530 821160 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPA S.X. H.G.
0.50 65.3 At3g16310 820878 mitotic phosphoprotein N' end (MPPN) family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF S.X. H.G.
0.45 58.3 At5g20890 832213 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:anchored to plasma membrane, cell wall;BOMFPA S.X. H.G.
0.44 57.2 At3g11830 820356 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:cellular_component unknown;BOMFPA S.X. H.G.
0.43 55.3 At3g57290 824896 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation. S.X. H.G.
0.40 50.8 At5g14520 831303 pescadillo-related F:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.8 99.7 E-MEXP-1797-raw-cel-1669768021
33.5 99.7 E-MEXP-1797-raw-cel-1669768003
33.1 99.7 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.6 99.7 E-MEXP-1797-raw-cel-1669768039
32.3 99.7 E-MEXP-1797-raw-cel-1669767985
28.5 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.3 99.7 GSM252665 Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
27.5 99.7 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
26.7 99.7 E-MEXP-1797-raw-cel-1669767949
25.9 99.7 E-MEXP-1797-raw-cel-1669768075
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 1766 At3g02530 821160 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPA C.G. S.X.
0.01 2e-1 38 At2g07170 815286 binding F:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMA C.G. S.X.
0.01 2e-1 38 At1g63730 842677 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAF C.G. S.X.
0.02 8e-1 36 At4g26230 828729 60S ribosomal protein L31 (RPL31B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPAFB C.G. S.X.
0.01 8e-1 36 At3g47840 823940 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.01 8e-1 36 At1g29180 839792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 8e-1 36 At1g78420 844178 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;FPMO C.G. S.X.
0.02 8e-1 36 At1g09483 837472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-45 184 Glycine max Gma.4814.1.S1_s_at BE657319 - - 9e-46 At5g16070 chaperonin, putative C.G. S.X.
0.40 7e-46 184 Hordeum vulgare Contig3922_at Contig3922 - - 2e-45 At5g16070 chaperonin, putative C.G. S.X.
0.50 9e-67 256 Oryza sativa Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative C.G. S.X.
0.57 7e-110 398 Populus trichocarpa PtpAffx.215448.1.S1_at pmrna29650 hypothetical protein - 0 At3g02530 chaperonin, putative C.G. S.X.
0.40 2e-35 151 Triticum aestivum Ta.6733.2.S1_x_at CD888689 - - 2e-35 At5g16070 chaperonin, putative C.G. S.X.
0.40 1e-73 276 Vitis vinifera 1615908_at CF214075 hypothetical protein LOC100249757 - 9e-88 At3g02530 chaperonin, putative C.G. S.X.
0.48 1e-96 353 Zea mays Zm.6782.1.A1_at CF061901 hypothetical protein LOC100193477 - 5e-92 At5g16070 chaperonin, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
L GO:0044267 The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage