Gene omics information

Query gene ID At5g15960
Gene name KIN1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At5g15960831453KIN1cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.S.X.H.G.
0.6781.6At4g30650829188hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOS.X.H.G.
0.6075.7At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFS.X.H.G.
0.3846.7At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.S.X.H.G.
0.2217.5At4g30660829189hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.799.7GSM173444wild-type Arabidopsis, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
26.999.7E-MEXP-509-raw-cel-829148561
23.599.6GSM173442wild-type Arabidopsis, biological rep1GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
21.999.6GSM173443wild-type Arabidopsis, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
19.499.6E-MEXP-509-raw-cel-829148240
18.899.5E-MEXP-509-raw-cel-829148492
18.199.5E-MEXP-509-raw-cel-829148313
17.699.5E-MEXP-509-raw-cel-829148632
17.499.5E-MEXP-509-raw-cel-829148597
16.499.5GSM128794Zarka_1-6_MT-WT24HB_Rep2_ATH1GSE5534Response to cold, plate grown plants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.954e-87319At5g15970831454KIN2Encodes a gene that can be induced by cold and abscisic acid and may be involved in cold acclimation and salt tolerance.C.G.S.X.
0.234e-444At3g02480821185ABA-responsive protein-relatedF:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMFC.G.S.X.
0.034e-444At1g25380839124mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVC.G.S.X.
0.032e-238At3g62670825441ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20)member of Response Regulator: B- TypeC.G.S.X.
0.034e-134At5g38470833835DNA repair protein RAD23, putativeF:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVAC.G.S.X.
0.014e-134At4g10730826667ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVAC.G.S.X.
0.044e-134At4g31370829264FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR)fasciclin-like arabinogalactan-protein, putative (FLA5)C.G.S.X.
0.034e-134At3g09540820111pectate lyase family proteinF:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.058e-340Glycine maxPsAffx.CL577Contig1_atPsAffx.CL577Contig1--2e-2At5g15960KIN1C.G.S.X.
0.052e-134Hordeum vulgareContig11287_s_atContig11287--1e+0At5g15960KIN1C.G.S.X.
0.052e-136Oryza sativaOs03g01426009631.m00405-Myb, DNA-binding domain containing protein2e-5At3g01530AtMYB57 (myb domain protein 57)C.G.S.X.
0.051e-136Populus trichocarpaPtpAffx.23095.1.S1_atCX177404hypothetical protein-1e-3At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)C.G.S.X.
0.053e-238Triticum aestivumTaAffx.8388.1.S1_atCA626252--7e-2At5g15960KIN1C.G.S.X.
0.047e+028Vitis vinifera1621938_x_atCF201198.1--1e+0At5g62350invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)C.G.S.X.
0.032e-134Zea maysZm.6840.1.S1_atCD44793840S ribosomal protein S26-1e-10At2g4059040S ribosomal protein S26 (RPS26B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0010017The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009631Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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