Gene omics information

Query gene ID At5g15800
Gene name SEP1 (SEPALLATA1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.S.X.H.G.
0.8994.6At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.S.X.H.G.
0.8994.6At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoS.X.H.G.
0.6781.6At3g54340824601AP3 (APETALA 3)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.S.X.H.G.
0.5065.3At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
96.199.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
93.499.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
73.599.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
63.799.8GSM47019Ler 9GSE2473Small RNA biogenesis mutants
44.999.8GSM133816Yang_1-1_young-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
43.399.8GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
43.299.8GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
42.799.8GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
40.599.8E-MEXP-285-raw-cel-440783213
38.599.8E-MEXP-1451-raw-cel-1585200362
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.819e-178623At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoC.G.S.X.
0.232e-33143At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.C.G.S.X.
0.199e-33141At2g45650819173AGL6 (AGAMOUS-LIKE 6)sequence suggests this encodes a MADS-box transcription factorC.G.S.X.
0.198e-27121At2g03710814898SEP4 (SEPALLATA 4)This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.C.G.S.X.
0.167e-1891At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.232e-34147Glycine maxGmaAffx.70788.1.S1_atAI959798--8e-35At2g03710SEP4 (SEPALLATA 4)C.G.S.X.
0.091e-859Hordeum vulgareContig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.163e-1273Oryza sativaOs09g0507200U78892.1-MADS box protein1e-20At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.336e-50198Populus trichocarpaPtpAffx.9092.1.S1_s_atAF185574.2hypothetical protein-2e-56At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.122e-963Triticum aestivumTa.13865.1.S1_atAF543316.1MADS box protein-3e-9At5g15800SEP1 (SEPALLATA1)C.G.S.X.
0.205e-41167Vitis vinifera1615428_atAF373601.1MADS-box protein 2-2e-40At5g15800SEP1 (SEPALLATA1)C.G.S.X.
0.043e-342Zea maysZm.14912.1.S1_atBQ703314Zea mays MADS7-1e-2At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
XGO:0009908The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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