Gene omics information

Query gene ID At5g14990
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4355.3At5g14990831351-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVS.X.H.G.
0.5065.3At2g13720815856ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPVS.X.H.G.
0.4050.8At1g27610839653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.4050.8At3g313903769189transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.040.9At4g08640826429ATP binding / protein bindingF:protein binding, ATP binding;P:cellular protein metabolic process;C:cellular_component unknown;MFOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
981.7100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
820.1100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
133.799.9GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
129.899.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.699.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.199.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.899.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
107.099.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.699.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
104.899.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-346At3g07200819908zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.011e-346At2g34730818038myosin heavy chain-relatedF:unknown;P:unknown;C:mitochondrion;MOBFPAVC.G.S.X.
0.012e-242At3g25100822101CDC45 (cell division cycle 45)Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45C.G.S.X.
0.012e-242At3g60740825245TTN1 (TITAN 1)Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.C.G.S.X.
0.016e-240At5g44510834478TAO1 (TARGET OF AVRB OPERATION1)Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.C.G.S.X.
0.016e-240At4g29230829044anac075 (Arabidopsis NAC domain containing protein 75)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBVC.G.S.X.
0.016e-240At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).C.G.S.X.
0.016e-240At1g69610843297structural constituent of ribosomeF:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e-344Glycine maxGmaAffx.56310.1.S1_atBU763790--1e+0At3g46640PCL1 (PHYTOCLOCK 1)C.G.S.X.
0.011e-138Hordeum vulgareContig20736_atContig20736--2e-40At4g26110NAP1C.G.S.X.
0.011e-140Oryza sativaOsAffx.23987.1.S1_at---0C.G.S.X.
0.044e-448Populus trichocarpaPtpAffx.209402.1.S1_atpmrna18621hypothetical protein-5e-4At5g14990-C.G.S.X.
0.033e-138Triticum aestivumTaAffx.24874.1.S1_atCA710703--7e+0At3g09940MDHAR (MONODEHYDROASCORBATE REDUCTASE)C.G.S.X.
0.023e-136Vitis vinifera1611583_atCF405989hypothetical protein LOC100250412-3e-5At5g52020AP2 domain-containing proteinC.G.S.X.
0.014e-136Zea maysZm.4795.1.A1_atBM074194--8e-2At3g63230unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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