Gene omics information

Query gene ID At5g14770
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g14770831329pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.6982.9At4g14850827142LOI1 (lovastatin insensitive 1)Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase.S.X.H.G.
0.6277.3At5g49410835001unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6176.7At5g15300831382pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.6075.7At1g16800838251tRNA-splicing endonuclease positive effector-relatedF:poly(U) binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.5974.7At5g39680833964EMB2744 (EMBRYO DEFECTIVE 2744)F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;POMFS.X.H.G.
0.5267.4At5g27680832830RECQSIM (Arabidopsis RecQ helicase sim)DNA helicaseS.X.H.G.
0.5267.4At4g00020828230protein binding / single-stranded DNA bindingOrtholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.S.X.H.G.
0.4253.9At2g37320818309pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBS.X.H.G.
0.3948.4At1g14770838042protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
288.4100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
282.6100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
278.9100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
276.6100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
231.0100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
225.9100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
216.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
214.5100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
213.0100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
210.4100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-344At2g06000815153pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.022e-242At5g572505008310-F:unknown;P:unknown;C:unknown;POMFBAC.G.S.X.
0.019e-240At5g46680834711pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.019e-240At1g28360839732ERF12 (ERF DOMAIN PROTEIN 12)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.C.G.S.X.
0.014e-138At5g27330832791-F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAVC.G.S.X.
0.014e-138At4g25600828665ShTK domain-containing proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:unknown;MPBOVC.G.S.X.
0.024e-138At3g53700824537MEE40 (maternal effect embryo arrest 40)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAC.G.S.X.
0.014e-138At3g13150820503pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.015e-138Glycine maxHgAffx.19515.1.S1_atCD748446--1e+0At1g65720unknown proteinC.G.S.X.
0.011e+132Hordeum vulgareEBro07_SQ001_D09_atEBro07_SQ001_D09--4e-11At1g47560unknown proteinC.G.S.X.
0.017e-138Oryza sativaOsAffx.4499.1.S1_at---0C.G.S.X.
0.025e-138Populus trichocarpaPtpAffx.211568.1.S1_atpmrna22675hypothetical protein-7e-2At5g28460pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.016e+034Triticum aestivumTaAffx.4739.1.S1_atCA733273--1e+0At1g14630unknown proteinC.G.S.X.
0.012e+034Vitis vinifera1608315_atCA814287hypothetical protein LOC100245542-3e-17At4g36900RAP2.10 (related to AP2 10)C.G.S.X.
0.011e+132Zea maysZmAffx.170.1.S1_atAI668224--8e-1At1g13245RTFL17 (ROTUNDIFOLIA LIKE 17)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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