Gene omics information

Query gene ID At5g14700
Gene name cinnamoyl-CoA reductase-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At5g14700831322cinnamoyl-CoA reductase-relatedF:binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;POBFMVAS.X.H.G.
0.6579.6At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
0.5673.0At2g35710818140glycogenin glucosyltransferase (glycogenin)-relatedF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBVS.X.H.G.
0.5673.0At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.S.X.H.G.
0.5673.0At3g23230821901ethylene-responsive factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.5673.0At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5368.6At1g35210840410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POS.X.H.G.
0.5368.6At1g20310838619unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.5166.3At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVS.X.H.G.
0.5065.3At2g35930818166PUB23 (PLANT U-BOX 23)Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
157.499.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
136.699.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
114.699.9GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutants
110.199.9GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
109.699.9GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
108.999.9GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.039e-342At1g22160838821senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.011e-138At4g21670828254CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1)encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.C.G.S.X.
0.015e-136At5g48390834894ATZIP4Defective in meiotic chromosome segregationC.G.S.X.
0.025e-136At4g242046240443protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVFC.G.S.X.
0.025e-136At1g28490839749SYP61 (SYNTAXIN OF PLANTS 61)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxGmaAffx.38173.1.S1_atBU927495--1e-2At3g02240unknown proteinC.G.S.X.
0.024e+032Hordeum vulgareContig17532_atContig17532--3e-1At1g09415NIMIN-3 (NIM1-INTERACTING 3)C.G.S.X.
0.024e+034Oryza sativaOs02g04601009630.m02467--6e+0At5g03840TFL1 (TERMINAL FLOWER 1)C.G.S.X.
0.022e-138Populus trichocarpaPtpAffx.154539.1.S1_s_atBP926599hypothetical protein-1e+0At5g66815unknown proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.86157.1.S1_atCA615825--4e+0At3g15640cytochrome c oxidase family proteinC.G.S.X.
0.026e-134Vitis vinifera1613836_atCB346820--3e+0At2g15280reticulon family protein (RTNLB10)C.G.S.X.
0.024e+032Zea maysZm.7036.1.S1_atCF041561hypothetical protein LOC100278098-2e-8At2g45860unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009809The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
LGO:0006694The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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