CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g14700

Gene name cinnamoyl-CoA reductase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g14700 831322 cinnamoyl-CoA reductase-related F:binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;POBFMVA S.X. H.G.
0.65 79.6 At5g27420 832801 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFV S.X. H.G.
0.56 73.0 At2g35710 818140 glycogenin glucosyltransferase (glycogenin)-related F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBV S.X. H.G.
0.56 73.0 At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. S.X. H.G.
0.56 73.0 At3g23230 821901 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.56 73.0 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.53 68.6 At1g35210 840410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.53 68.6 At1g20310 838619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.51 66.3 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.50 65.3 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.5 100.0 E-MEXP-807-raw-cel-1173273144
159.6 99.9 E-MEXP-807-raw-cel-1173273252
157.4 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
136.6 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
114.6 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
113.0 99.9 E-MEXP-807-raw-cel-1173273170
110.1 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
109.6 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
108.9 99.9 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
108.5 99.9 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 9e-3 42 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 1e-1 38 At4g21670 828254 CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. C.G. S.X.
0.01 5e-1 36 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation C.G. S.X.
0.02 5e-1 36 At4g24204 6240443 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF C.G. S.X.
0.02 5e-1 36 At1g28490 839749 SYP61 (SYNTAXIN OF PLANTS 61) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.38173.1.S1_at BU927495 - - 1e-2 At3g02240 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig17532_at Contig17532 - - 3e-1 At1g09415 NIMIN-3 (NIM1-INTERACTING 3) C.G. S.X.
0.02 4e+0 34 Oryza sativa Os02g0460100 9630.m02467 - - 6e+0 At5g03840 TFL1 (TERMINAL FLOWER 1) C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.154539.1.S1_s_at BP926599 hypothetical protein - 1e+0 At5g66815 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.86157.1.S1_at CA615825 - - 4e+0 At3g15640 cytochrome c oxidase family protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1613836_at CB346820 - - 3e+0 At2g15280 reticulon family protein (RTNLB10) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.7036.1.S1_at CF041561 hypothetical protein LOC100278098 - 2e-8 At2g45860 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009809 The chemical reactions and pathways resulting in the formation of lignins, a class of polymers formed by the dehydrogenetive radical polymerization of various phenylpropanoid monomers.
L GO:0006694 The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00064 The cinnamate-monolignol pathway/sinapoyl ester biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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