CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g14640

Gene name SK13 (SHAGGY-LIKE KINASE 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g14640 831316 SK13 (SHAGGY-LIKE KINASE 13) F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MPOFBVA S.X. H.G.
0.43 55.3 At5g64610 836582 HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1) Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5. S.X. H.G.
0.40 50.8 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
0.38 46.7 At1g16900 838261 sugar binding / transferase, transferring glycosyl groups curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein S.X. H.G.
0.38 46.7 At3g04610 819619 FLK (flowering locus KH domain) F:RNA binding, nucleic acid binding;P:positive regulation of flower development;C:nucleus;MOPFVB S.X. H.G.
0.36 43.6 At1g52310 841661 protein kinase family protein / C-type lectin domain-containing protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.35 41.6 At3g22520 821823 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA S.X. H.G.
0.30 32.1 At1g18450 838425 ATARP4 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. S.X. H.G.
0.29 30.3 At1g03910 839371 - F:unknown;P:unknown;C:unknown;MOFPBVA S.X. H.G.
0.29 30.3 At3g22990 821873 LFR (LEAF AND FLOWER RELATED) Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.9 99.8 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.0 99.7 GSM133777 Lindsey_1-4_globular-basal_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.5 99.7 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
26.3 99.7 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
20.1 99.6 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
19.6 99.6 E-TABM-52-raw-cel-1583683182
18.7 99.5 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
17.7 99.5 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
15.6 99.5 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.8 99.4 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 2e-40 167 At3g05840 819753 ATSK12 encodes a SHAGGY-like kinase involved in meristem organization. C.G. S.X.
0.18 4e-36 153 At1g57870 842162 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MOPFBVA C.G. S.X.
0.53 1e-35 151 At5g26751 832733 ATSK11 encodes a SHAGGY-related kinase involved in meristem organization. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 5e-36 153 Glycine max Gma.11129.1.S1_at BE657610 - - 6e-119 At3g05840 ATSK12 C.G. S.X.
0.38 6e-61 234 Hordeum vulgare Contig5540_at Contig5540 - - 1e-52 At3g05840 ATSK12 C.G. S.X.
0.45 1e-49 198 Oryza sativa Os01g0252100 AK068737.1 - Glycogen synthase kinase-3 homolog MsK-3 (EC2.7.1.-) 1e-49 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
0.47 1e-49 198 Populus trichocarpa PtpAffx.147982.1.S1_s_at BI136334 hypothetical protein - 2e-115 At5g26751 ATSK11 C.G. S.X.
0.38 2e-35 151 Triticum aestivum Ta.20401.1.S1_at BJ261212 Shaggy-like kinase - 3e-35 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
0.48 1e-39 163 Vitis vinifera 1618465_at CB918507 hypothetical protein LOC100252099 - 2e-39 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
0.44 5e-43 174 Zea mays Zm.6802.1.S1_at AI737806 glycogen synthase kinase-3 MsK-3 - 2e-42 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006972 A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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