CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g14420

Gene name RGLG2 (RING domain Ligase2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g14420 831293 RGLG2 (RING domain Ligase2) F:ubiquitin-protein ligase activity;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPVFB S.X. H.G.
0.40 50.8 At4g30790 829202 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOFBPAV S.X. H.G.
0.17 10.2 At2g36960 818270 TKI1 (TSL-kinase interacting protein 1) Arabidopsis thaliana myb/SANT domain protein S.X. H.G.
0.17 10.2 At5g45900 834630 APG7 (AUTOPHAGY 7) Component of autophagy conjugation pathway. Required for proper senescence. S.X. H.G.
0.06 1.4 At5g66930 836827 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.2 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
44.2 99.8 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
29.4 99.7 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
29.1 99.7 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
28.5 99.7 GSM133951 Murray_2-7_T12-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
27.0 99.7 GSM133950 Murray_2-6_T10-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
23.5 99.6 GSM133952 Murray_2-8_T14-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
23.3 99.6 GSM133949 Murray_2-5_T8-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
22.4 99.6 GSM133953 Murray_2-9_T16-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
20.4 99.6 GSM133948 Murray_2-4_T6-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 8e-161 567 At3g01650 819911 RGLG1 (RING domain Ligase1) F:protein binding, zinc ion binding;P:N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process;C:plasma membrane;MOPFBVA C.G. S.X.
0.10 5e-8 59 At1g67800 843106 copine-related F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF C.G. S.X.
0.01 7e-4 46 At3g18640 821395 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 2e-32 141 Glycine max Gma.4028.1.S1_a_at BU546487 - - 2e-32 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.21 2e-11 69 Hordeum vulgare Contig7538_at Contig7538 - - 8e-11 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.15 1e-7 59 Oryza sativa Os.5842.1.S1_at - - - 0 C.G. S.X.
0.38 2e-51 204 Populus trichocarpa PtpAffx.249.194.S1_at DN484997 hypothetical protein - 2e-51 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.13 5e-8 59 Triticum aestivum Ta.23247.1.S1_x_at CK163981 - - 1e-12 At1g67800 copine-related C.G. S.X.
0.18 4e-24 111 Vitis vinifera 1617199_at CB003856 - - 1e-23 At5g14420 RGLG2 (RING domain Ligase2) C.G. S.X.
0.05 5e-12 71 Zea mays Zm.5022.1.S1_at BM074052 hypothetical protein LOC100279516 - 1e-17 At1g67800 copine-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009690 The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
X GO:0009850 The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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