CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13870

Gene name EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, S.X. H.G.
0.71 84.2 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.65 79.6 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM S.X. H.G.
0.64 78.9 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
0.64 78.9 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. S.X. H.G.
0.62 77.3 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.62 77.3 At4g39500 830104 CYP96A11 member of CYP96A S.X. H.G.
0.61 76.7 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF S.X. H.G.
0.59 74.7 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF S.X. H.G.
0.59 74.7 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.0 100.0 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
103.2 99.9 GSM299328 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 2 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
100.5 99.9 GSM173648 mARF10 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
97.0 99.9 GSM299332 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
96.4 99.9 GSM173649 mARF10 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
92.7 99.9 GSM299327 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 1 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
91.5 99.9 GSM173651 mARF10 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
88.8 99.9 GSM299329 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
87.3 99.9 GSM299330 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 4 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
82.7 99.9 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 3e-11 69 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene C.G. S.X.
0.08 2e-9 63 At3g23730 821955 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.06 7e-6 52 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) C.G. S.X.
0.05 1e-4 48 At1g11545 837698 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO C.G. S.X.
0.04 2e-3 44 At2g01850 814716 EXGT-A3 EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves. C.G. S.X.
0.02 3e-2 40 At4g18990 827635 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOA C.G. S.X.
0.09 3e-2 40 At4g30290 829152 XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. C.G. S.X.
0.03 3e-2 40 At3g25050 822096 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment. C.G. S.X.
0.05 1e-1 38 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 3e-49 196 Glycine max Gma.4216.1.S1_a_at BI970653 - - 2e-32 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.41 6e-11 67 Hordeum vulgare Contig5258_at Contig5258 - - 2e-10 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.22 4e-9 63 Oryza sativa Os.11465.1.S1_at - - - 0 C.G. S.X.
0.38 9e-31 135 Populus trichocarpa Ptp.7034.1.S1_at BU866834 hypothetical protein - 5e-31 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.30 5e-4 46 Triticum aestivum Ta.30703.1.S1_at D16457.1 endo-xyloglucan transferase - 8e-4 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.17 2e-31 135 Vitis vinifera 1617739_at CB976948 xyloglucan endotransglycosylase XET2 - 9e-31 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
0.27 8e-7 54 Zea mays Zm.6419.1.A1_at CF635415 xyloglucan endotransglucosylase/hydrolase - 3e-6 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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