Gene omics information

Query gene ID At5g13800
Gene name hydrolase, alpha/beta fold family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At5g13800831225hydrolase, alpha/beta fold family proteinF:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAFS.X.H.G.
0.7586.9At3g44880823622ACD1 (ACCELERATED CELL DEATH 1)Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.S.X.H.G.
0.3235.7At3g21790821733UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVFS.X.H.G.
0.2522.6At1g64810842789APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)chloroplast APO1S.X.H.G.
0.2014.4At4g17840827507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
95.899.9GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
90.099.9GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
87.099.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
85.399.9GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
75.199.9GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
35.399.7GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At4g34200829568EDA9 (embryo sac development arrest 9)F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAVC.G.S.X.
0.012e-138At2g31650817721ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX)Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.C.G.S.X.
0.017e-136At5g09320830791VPS9BF:molecular_function unknown;P:transport;C:cellular_component unknown;MPFOC.G.S.X.
0.017e-136At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVC.G.S.X.
0.017e-136At5g18340831952U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMFOBC.G.S.X.
0.017e-136At5g44100834433ckl7 (Casein Kinase I-like 7)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.017e-136At4g27720828886-F:unknown;P:unknown;C:plasma membrane;BPMOFAC.G.S.X.
0.027e-136At4g03240828013FH (FRATAXIN HOMOLOG)Encodes AtFH, a frataxin homolog. Frataxin is required for the biogenesis of mitochondria in different organisms. AtFH knock-out mutants are lethal. Required for full activity of mitochondrial Fe-S proteins. Deficiency of AtFH induces oxidative stress.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.047e-550Glycine maxGmaAffx.20622.1.A1_atAI856041--2e-5At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.074e-756Hordeum vulgareContig5484_atContig5484--1e-6At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.096e-344Oryza sativaOs06g0354700AK068937.1-Alpha/beta hydrolase fold domain containingprotein5e-3At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.143e-757Populus trichocarpaPtpAffx.200810.1.S1_s_atpmrna1588hypothetical protein-6e-8At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.082e-1067Triticum aestivumTa.20644.1.S1_atCA486815--1e-10At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.116e-1477Vitis vinifera1609451_atCA818791hypothetical protein LOC100265442-1e-13At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
0.192e-1169Zea maysZm.18085.1.S1_atCK986038hypothetical protein LOC100274126-5e-11At5g13800hydrolase, alpha/beta fold family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015996The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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