CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13760

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g13760 831221 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBA S.X. H.G.
0.79 89.1 At4g16100 827296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.76 87.4 At1g13450 837905 DNA binding protein GT-1 F:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOB S.X. H.G.
0.76 87.4 At5g16800 831543 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOBPAFV S.X. H.G.
0.72 84.8 At2g34690 818034 ACD11 (ACCELERATED CELL DEATH 11) Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. S.X. H.G.
0.72 84.8 At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA S.X. H.G.
0.71 84.2 At1g56560 842110 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB S.X. H.G.
0.71 84.2 At5g45360 834572 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB S.X. H.G.
0.68 82.2 At1g04830 839404 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPB S.X. H.G.
0.68 82.2 At3g54380 824604 SAC3/GANP family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
85.1 99.9 E-ATMX-35-raw-cel-1574334832
72.6 99.9 E-ATMX-35-raw-cel-1574334816
31.8 99.7 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
31.3 99.7 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
30.3 99.7 E-ATMX-35-raw-cel-1574334800
25.6 99.7 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.7 99.6 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
20.4 99.6 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.2 99.6 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
18.8 99.5 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g19090 821444 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFB C.G. S.X.
0.01 2e-1 38 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA C.G. S.X.
0.01 8e-1 36 At5g56250 835724 HAP8 (HAPLESS 8) F:unknown;P:unknown;C:chloroplast;MPOFB C.G. S.X.
0.01 8e-1 36 At5g17210 831585 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 8e-1 36 At4g18870 827621 heat shock transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO C.G. S.X.
0.02 8e-1 36 At2g05632 6240607 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.80245.2.S1_at BU965550 - - 6e-2 At4g05400 unknown protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HD05L07r_at HD05L07r - - 3e-1 At2g35270 DNA-binding protein-related C.G. S.X.
0.02 1e-1 40 Oryza sativa Os07g0158500 9635.m00586 - CCAAT-binding transcription factor, subunit Bfamily protein 4e-1 At4g01985 unknown protein C.G. S.X.
0.13 3e-13 77 Populus trichocarpa PtpAffx.11018.2.A1_a_at CN549658 hypothetical protein - 1e-13 At5g13760 unknown protein C.G. S.X.
0.02 6e-2 40 Triticum aestivum TaAffx.5885.1.S1_at CA696677 - - 8e-1 At4g17440 unknown protein C.G. S.X.
0.04 4e-6 52 Vitis vinifera 1607594_at CB980904 - - 4e-6 At5g13760 unknown protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.8301.1.A1_at BM379812 hypothetical protein LOC100278224 - 1e+0 At4g21780 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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