CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13750

Gene name ZIFL1 (ZINC INDUCED FACILITATOR-like 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP S.X. H.G.
0.75 86.9 At2g29480 817497 ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.53 68.6 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.50 65.3 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.35 41.6 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF S.X. H.G.
0.33 38.1 At4g13180 826932 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.8 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
62.5 99.8 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
62.0 99.8 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
60.5 99.8 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
57.8 99.8 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
57.5 99.8 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
51.2 99.8 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
46.4 99.8 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
45.2 99.8 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
41.4 99.8 GSM184932 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 5e-14 79 At5g13740 831219 ZIF1 (ZINC INDUCED FACILITATOR 1) F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAP C.G. S.X.
0.04 5e-5 50 At3g43790 823490 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:membrane;BFOMAP C.G. S.X.
0.01 2e-1 38 At1g54440 841886 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP C.G. S.X.
0.01 7e-1 36 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO C.G. S.X.
0.01 3e+0 34 At5g66950 836829 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-3 44 Glycine max GmaAffx.76608.1.S1_at BG405184 - - 5e-4 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
0.05 6e-3 42 Hordeum vulgare Contig8050_at Contig8050 - - 6e-5 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
0.04 9e-2 40 Oryza sativa Os01g0279400 AF543418.1 - Major facilitator superfamily antiporter 6e-2 At5g13750 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) C.G. S.X.
0.16 2e-5 52 Populus trichocarpa PtpAffx.206020.1.S1_at pmrna11930 hypothetical protein - 1e-5 At5g13750 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) C.G. S.X.
0.05 5e-5 50 Triticum aestivum Ta.4165.1.S1_at CA698963 - - 3e-5 At5g13750 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) C.G. S.X.
0.18 4e-12 71 Vitis vinifera 1608470_at CA813376 hypothetical protein LOC100247150 - 9e-12 At5g13750 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.18344.1.A1_at CD447784 hypothetical protein LOC100273965 - 1e-1 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015904 The directed movement of tetracycline into, out of, within or between cells. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
L GO:0046677 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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