CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13670

Gene name nodulin MtN21 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM S.X. H.G.
0.92 96.0 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.88 94.0 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. S.X. H.G.
0.86 93.1 At1g24540 839069 CYP86C1 member of CYP86C S.X. H.G.
0.84 91.9 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA S.X. H.G.
0.79 89.1 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. S.X. H.G.
0.78 88.6 At1g11590 837702 pectin methylesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM S.X. H.G.
0.75 86.9 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF S.X. H.G.
0.75 86.9 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO S.X. H.G.
0.74 86.1 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
523.2 100.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
324.8 100.0 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
291.2 100.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
251.4 100.0 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
240.6 100.0 E-MEXP-285-raw-cel-440783213
234.9 100.0 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
234.2 100.0 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
211.8 100.0 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
175.3 100.0 E-MEXP-285-raw-cel-440783152
138.3 99.9 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-1 36 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF C.G. S.X.
0.02 6e-1 36 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.01 6e-1 36 At1g67020 843020 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g65990 836729 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPOFBAV C.G. S.X.
0.02 2e+0 34 At4g40040 830165 histone H3.2 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO C.G. S.X.
0.02 2e+0 34 At3g04430 819598 anac049 (Arabidopsis NAC domain containing protein 49) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Glycine max GmaAffx.25912.1.S1_at BU545028 - - 1e-1 At5g46720 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HY07G20u_at HY07G20u - - 2e-1 At2g28610 PRS (PRESSED FLOWER) C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.25411.1.S1_at - - - 0 C.G. S.X.
0.05 8e-7 56 Populus trichocarpa PtpAffx.207691.1.S1_at pmrna15265 hypothetical protein - 6e-7 At2g39510 nodulin MtN21 family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.12867.1.S1_at BJ213795 - - 3e+0 At5g57000 unknown protein C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1613671_at CF212876 hypothetical protein LOC100241076 - 2e-2 At4g36690 ATU2AF65A C.G. S.X.
0.02 2e-1 36 Zea mays Zm.13013.1.A1_at CF630690 hypothetical protein LOC100274860 - 2e+0 At4g22320 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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