Gene omics information

Query gene ID At5g13580
Gene name ABC transporter family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVS.X.H.G.
1.00100.0At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOS.X.H.G.
0.9597.0At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
0.9195.6At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVS.X.H.G.
0.8693.1At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAS.X.H.G.
0.8290.9At1g68850843218peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.7888.6At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAS.X.H.G.
0.7788.0At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAS.X.H.G.
0.7687.4At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMS.X.H.G.
0.6478.9At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
153.399.9GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
118.899.9GSM106917opr3_JA_22 hrs_Rep3GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
117.199.9GSM106915opr3_JA_22 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
114.599.9E-MEXP-828-raw-cel-1156922659
103.599.9E-MEXP-828-raw-cel-1156922438
97.899.9GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
82.799.9GSM75508Col-0 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
74.699.9GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
70.099.9GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
69.699.9GSM75512Col-0 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.342e-60234At3g55090824675ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPVC.G.S.X.
0.165e-52206At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.C.G.S.X.
0.356e-30133At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVC.G.S.X.
0.144e-28127At3g55110824677ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVC.G.S.X.
0.242e-26121At2g37360818312ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVC.G.S.X.
0.191e-1585At3g53510824519ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVC.G.S.X.
0.192e-1481At3g55100824676ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVC.G.S.X.
0.013e-138At5g52860835363ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVC.G.S.X.
0.013e-138At1g52100841640jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e-138Glycine maxGmaAffx.35147.1.S1_atBE057270--1e+1At5g44572unknown proteinC.G.S.X.
0.018e+032Hordeum vulgareContig8812_s_atContig8812--2e+0At2g03710SEP4 (SEPALLATA 4)C.G.S.X.
0.059e-344Oryza sativaOs03g0281900AK072135.1-ABC transporter related domain containing protein3e-1At3g53510ABC transporter family proteinC.G.S.X.
0.205e-1377Populus trichocarpaPtpAffx.207670.1.S1_atpmrna15228white-brown-complex ABC transporter family-6e-18At2g39350ABC transporter family proteinC.G.S.X.
0.067e-240Triticum aestivumTaAffx.29542.1.S1_atCA640664--1e-2At5g13580ABC transporter family proteinC.G.S.X.
0.013e-136Vitis vinifera1621890_atCF516811hypothetical protein LOC100266559-4e+0At5g42910basic leucine zipper transcription factor (BZIP15)C.G.S.X.
0.015e-136Zea maysZmAffx.1161.1.A1_atAW438287CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-5e-2At5g51010rubredoxin family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009624A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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