CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13500

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g13500 831194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.45 58.3 At5g14310 831281 AtCXE16 (Arabidopsis thaliana carboxyesterase 16) F:hydrolase activity;P:metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.44 57.2 At5g03290 831884 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAP S.X. H.G.
0.41 52.4 At1g21370 838736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPO S.X. H.G.
0.36 43.6 At2g36300 818202 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOP S.X. H.G.
0.33 38.1 At2g34250 817986 protein transport protein sec61, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:response to salt stress, protein secretion;C:membrane;BOMAFP S.X. H.G.
0.33 38.1 At4g35260 829679 IDH1 (ISOCITRATE DEHYDROGENASE 1) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) S.X. H.G.
0.31 33.8 At1g19360 838519 - F:unknown;P:unknown;C:endoplasmic reticulum;PO S.X. H.G.
0.31 33.8 At2g20760 816605 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane;MBOPF S.X. H.G.
0.31 33.8 At5g09890 830849 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.4 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
26.1 99.7 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
21.9 99.6 GSM133983 Birnbaum_1-13_StageIII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
19.4 99.6 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
17.7 99.5 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
17.2 99.5 GSM184890 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
17.1 99.5 GSM184889 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
16.0 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.7 99.5 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
15.7 99.5 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 2e-6 54 At5g25265 832598 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;PO C.G. S.X.
0.13 2e-3 44 At2g25260 817064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.03 5e-1 36 At3g62840 825459 - F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPA C.G. S.X.
0.03 2e+0 34 At5g26330 832702 plastocyanin-like domain-containing protein / mavicyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PF C.G. S.X.
0.02 2e+0 34 At4g38090 829965 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFP C.G. S.X.
0.01 2e+0 34 At4g24320 828535 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 3e-22 107 Glycine max Gma.4953.1.S1_at BM271325 - - 1e-22 At5g13500 unknown protein C.G. S.X.
0.18 3e-4 46 Hordeum vulgare Contig2589_at Contig2589 - - 1e-3 At5g13500 unknown protein C.G. S.X.
0.12 7e-8 59 Oryza sativa Os01g0272600 AK067786.1 - Conserved hypothetical protein 5e-8 At5g13500 unknown protein C.G. S.X.
0.37 1e-14 81 Populus trichocarpa PtpAffx.204811.1.S1_at pmrna9484 hypothetical protein - 1e-14 At5g13500 unknown protein C.G. S.X.
0.15 3e-12 73 Triticum aestivum TaAffx.88842.1.S1_at CA643703 - - 2e-12 At5g13500 unknown protein C.G. S.X.
0.17 4e-8 57 Vitis vinifera 1619465_at CF519054 hypothetical protein LOC100249264 - 7e-65 At5g25265 unknown protein C.G. S.X.
0.12 6e-8 57 Zea mays Zm.2579.1.A1_at AW017722 hypothetical protein LOC100276855 - 2e-12 At5g25265 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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