CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13360

Gene name auxin-responsive GH3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF S.X. H.G.
0.77 88.0 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. S.X. H.G.
0.67 81.6 At4g36910 829844 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) Has a cystathionine Beta-synthase domain. S.X. H.G.
0.60 75.7 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. S.X. H.G.
0.60 75.7 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA S.X. H.G.
0.55 70.6 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. S.X. H.G.
0.44 57.2 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.44 57.2 At4g24660 828568 ATHB22 (HOMEOBOX PROTEIN 22) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.3 99.9 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
81.5 99.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
76.8 99.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
74.5 99.9 GSM133313 RIKEN-LI2A GSE5701 AtGenExpress: Basic hormone treatment of seeds
65.3 99.8 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
61.9 99.8 GSM133311 RIKEN-LI1A GSE5701 AtGenExpress: Basic hormone treatment of seeds
51.0 99.8 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
49.5 99.8 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
49.3 99.8 E-MEXP-849-raw-cel-1181980998
46.4 99.8 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 2022 At5g13370 831178 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.86 0 1612 At5g13350 831176 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.83 0 1427 At5g13380 831179 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.04 2e-8 61 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF C.G. S.X.
0.04 2e-7 57 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF C.G. S.X.
0.05 2e-5 52 At1g48670 841289 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF C.G. S.X.
0.05 6e-5 50 At5g13320 831173 PBS3 (AVRPPHB SUSCEPTIBLE 3) Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants. C.G. S.X.
0.05 4e-3 44 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 34 Glycine max Gma.3394.1.S1_at BQ627958 - - 3e+0 At3g61990 O-methyltransferase family 3 protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HU02A01u_s_at HU02A01u - - 4e+0 At5g60330 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os12g0173300 9640.m00678 - TCP transcription factor family protein 1e-8 At2g45070 SEC61 BETA C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.419.1.A1_at CV253156 - - 2e-18 At2g14960 GH3.1 C.G. S.X.
0.02 9e-1 36 Triticum aestivum Ta.18516.1.S1_at CA638135 - - 2e+0 At5g15853 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1611334_at CF568953 - - 1e+0 At4g38495 - C.G. S.X.
0.02 2e+0 34 Zea mays Zm.5851.14.A1_at BE453943 - - 9e-2 At1g75270 DHAR2 (DEHYDROASCORBATE REDUCTASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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