Gene omics information

Query gene ID At5g13190
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.157.8At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.5570.6At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.4659.8At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.4050.8At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.3338.1At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.899.7GSM244448Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.028e-134At1g48510841272cytochrome c oxidase assembly protein surfeit-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBC.G.S.X.
0.018e-134At1g23760838987JP630Encodes aromatic rich glycoprotein JP630.C.G.S.X.
0.018e-134At1g23180838926armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:chloroplast;PMFOC.G.S.X.
0.023e+032At5g49470835007protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVAC.G.S.X.
0.013e+032At5g43810834403ZLL (ZWILLE)Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.C.G.S.X.
0.013e+032At5g64320836553pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMBAC.G.S.X.
0.013e+032At5g42340834240binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBVC.G.S.X.
0.033e+032At5g61490836270-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.235e-1271Glycine maxGma.4178.1.S1_s_atBQ299028--8e-12At5g13190-C.G.S.X.
0.111e-1065Hordeum vulgareContig9865_atContig9865--5e-10At5g13190-C.G.S.X.
0.124e-446Oryza sativaOs02g0515600AK058947.1-LPS-induced tumor necrosis factor alpha factordomain containing protein3e-2At5g13190-C.G.S.X.
0.202e-1789Populus trichocarpaPtpAffx.17949.1.A1_a_atCV230098hypothetical protein-3e-17At5g13190-C.G.S.X.
0.103e-342Triticum aestivumTa.6702.1.S1_a_atBE213238--7e-3At5g13190-C.G.S.X.
0.094e-959Vitis vinifera1620869_atBQ792836--2e-8At5g13190-C.G.S.X.
0.112e-857Zea maysZm.16348.1.S1_atCB278158LITAF-domain-containing protein-9e-8At5g13190-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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