CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13190

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At5g13190 831158 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.55 70.6 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.46 59.8 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.40 50.8 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.33 38.1 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.1 99.8 E-MEXP-807-raw-cel-1173273196
37.1 99.7 E-MEXP-807-raw-cel-1173273223
32.9 99.7 E-MEXP-807-raw-cel-1173273170
29.6 99.7 E-MEXP-546-raw-cel-863289424
28.1 99.7 E-MEXP-546-raw-cel-863289476
27.9 99.7 E-MEXP-546-raw-cel-863289532
27.5 99.7 E-MEXP-546-raw-cel-863289506
26.5 99.7 E-MEXP-546-raw-cel-863289586
26.0 99.7 E-MEXP-546-raw-cel-863289450
25.8 99.7 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-1 34 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB C.G. S.X.
0.01 8e-1 34 At1g23760 838987 JP630 Encodes aromatic rich glycoprotein JP630. C.G. S.X.
0.01 8e-1 34 At1g23180 838926 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:chloroplast;PMFO C.G. S.X.
0.02 3e+0 32 At5g49470 835007 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.01 3e+0 32 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. C.G. S.X.
0.01 3e+0 32 At5g64320 836553 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMBA C.G. S.X.
0.01 3e+0 32 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV C.G. S.X.
0.03 3e+0 32 At5g61490 836270 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 5e-12 71 Glycine max Gma.4178.1.S1_s_at BQ299028 - - 8e-12 At5g13190 - C.G. S.X.
0.11 1e-10 65 Hordeum vulgare Contig9865_at Contig9865 - - 5e-10 At5g13190 - C.G. S.X.
0.12 4e-4 46 Oryza sativa Os02g0515600 AK058947.1 - LPS-induced tumor necrosis factor alpha factordomain containing protein 3e-2 At5g13190 - C.G. S.X.
0.20 2e-17 89 Populus trichocarpa PtpAffx.17949.1.A1_a_at CV230098 hypothetical protein - 3e-17 At5g13190 - C.G. S.X.
0.10 3e-3 42 Triticum aestivum Ta.6702.1.S1_a_at BE213238 - - 7e-3 At5g13190 - C.G. S.X.
0.09 4e-9 59 Vitis vinifera 1620869_at BQ792836 - - 2e-8 At5g13190 - C.G. S.X.
0.11 2e-8 57 Zea mays Zm.16348.1.S1_at CB278158 LITAF-domain-containing protein - 9e-8 At5g13190 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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