CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13150

Gene name ATEXO70C1 (exocyst subunit EXO70 family protein C1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g13150 831154 ATEXO70C1 (exocyst subunit EXO70 family protein C1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.68 82.2 At3g56960 824863 PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4) Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology. S.X. H.G.
0.66 80.1 At4g30770 829200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.65 79.6 At3g07960 819987 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPF S.X. H.G.
0.64 78.9 At5g14870 831339 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. S.X. H.G.
0.62 77.3 At1g63930 842696 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO S.X. H.G.
0.61 76.7 At5g64690 836590 neurofilament triplet H protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.60 75.7 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. S.X. H.G.
0.58 73.8 At2g13620 815847 ATCHX15 member of Putative Na+/H+ antiporter family S.X. H.G.
0.58 73.8 At5g36260 833623 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
191.7 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
166.3 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.4 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
150.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.9 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
134.4 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
133.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
131.1 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-3 44 At5g13990 831247 ATEXO70C2 (exocyst subunit EXO70 family protein C2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.01 2e-1 38 At5g58430 835956 ATEXO70B1 (exocyst subunit EXO70 family protein B1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.01 2e-1 38 At1g63080 842611 pentatricopeptide (PPR) repeat-containing protein Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage. C.G. S.X.
0.01 2e-1 38 At1g63400 842646 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.01 1e+0 36 At5g09840 830844 unknown protein F:unknown;P:unknown;C:mitochondrion;PMFOB C.G. S.X.
0.01 1e+0 36 At5g62620 836383 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity;P:protein amino acid glycosylation;C:chloroplast;MPOFB C.G. S.X.
0.01 1e+0 36 At5g39350 833931 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA C.G. S.X.
0.01 1e+0 36 At5g07870 830680 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Glycine max Gma.9061.1.S1_at CA819289 - - 4e-1 At1g23724 unknown protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig2546_at Contig2546 - - 6e+0 At5g37250 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e-2 42 Oryza sativa Os11g0167600 9639.m00604 - Exo70 exocyst complex subunit family protein 4e-3 At5g13990 ATEXO70C2 (exocyst subunit EXO70 family protein C2) C.G. S.X.
0.09 4e-13 77 Populus trichocarpa PtpAffx.200244.1.S1_at pmrna472 hypothetical protein - 3e-13 At5g13150 ATEXO70C1 (exocyst subunit EXO70 family protein C1) C.G. S.X.
0.01 4e+0 34 Triticum aestivum TaAffx.12385.2.A1_at BJ272993 - - 7e-2 At3g58130 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1621058_at CF205681.1 - - 8e-2 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.02 2e-3 44 Zea mays Zm.5567.1.A1_at BE552517 Histone H2B.2 - 6e-1 At1g07000 ATEXO70B2 (exocyst subunit EXO70 family protein B2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006904 The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis.
L GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage