CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13130

Gene name ATP binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At5g13130 831152 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPVBFA S.X. H.G.
0.76 87.4 At2g07130 3767761 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.74 86.1 At5g28160 832891 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.70 83.5 At1g09030 837424 NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4) F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MPFO S.X. H.G.
0.69 82.9 At5g27570 832817 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA S.X. H.G.
0.59 74.7 At1g33830 840278 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOB S.X. H.G.
0.59 74.7 At1g36830 3767037 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.57 73.8 At4g18080 827533 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;P S.X. H.G.
0.56 73.0 At1g21860 838788 sks7 (SKU5 Similar 7) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA S.X. H.G.
0.54 69.5 At3g18120 821337 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
348.1 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
335.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
318.8 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
317.1 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
311.9 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
307.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
258.2 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
248.1 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
244.3 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
222.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 3e-16 87 At5g50780 835150 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.14 5e-9 63 At4g24970 828599 ATP-binding region, ATPase-like domain-containing protein F:ATP binding;P:unknown;C:membrane;MOPBFA C.G. S.X.
0.02 5e-6 54 At4g36290 829786 ATP-binding region, ATPase-like domain-containing protein F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
0.01 3e-1 38 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. C.G. S.X.
0.01 3e-1 38 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO C.G. S.X.
0.01 3e-1 38 At1g70610 843398 ATTAP1 member of TAP subfamily C.G. S.X.
0.01 1e+0 36 At5g18700 831988 EMB3013 (embryo defective 3013) F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 1e+0 36 At4g36280 829785 ATP-binding region, ATPase-like domain-containing protein F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOB C.G. S.X.
0.01 1e+0 36 At2g22410 816772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 36 Glycine max GmaAffx.72312.1.S1_at BI892620 - - 3e-56 At1g19100 ATP-binding region, ATPase-like domain-containing protein-related C.G. S.X.
0.02 2e-3 44 Hordeum vulgare Contig10840_at Contig10840 - - 4e-6 At5g50780 ATP binding C.G. S.X.
0.09 2e-9 65 Oryza sativa OsAffx.26130.1.S1_x_at - - - 0 C.G. S.X.
0.23 5e-19 97 Populus trichocarpa PtpAffx.212897.1.S1_at pmrna25241 hypothetical protein - 3e-49 At4g24970 ATP-binding region, ATPase-like domain-containing protein C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.120037.1.S1_at BJ246898 - - 1e+0 At4g21570 unknown protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1619999_at CD799397 hypothetical protein LOC100261404 - 8e-1 At5g01712 CPuORF48 (Conserved peptide upstream open reading frame 48) C.G. S.X.
0.02 3e-2 40 Zea mays Zm.15119.1.A1_at BM079069 - - 2e+0 At2g06960 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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