CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g13000

Gene name ATGSL12 (glucan synthase-like 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At5g13000 831140 ATGSL12 (glucan synthase-like 12) encodes a gene similar to callose synthase S.X. H.G.
0.44 57.2 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein S.X. H.G.
0.31 33.8 At3g42660 823286 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV S.X. H.G.
0.22 17.5 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO S.X. H.G.
0.18 11.4 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. S.X. H.G.
0.15 7.8 At5g06590 830547 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
166.9 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
130.1 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
123.4 99.9 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
103.9 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
100.6 99.9 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
94.2 99.9 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
74.4 99.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.5 99.9 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.2 99.9 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
67.7 99.9 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 1e-79 299 At1g05570 837059 CALS1 (CALLOSE SYNTHASE 1) Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48. C.G. S.X.
0.33 1e-51 206 At2g31960 817755 ATGSL03 (GLUCAN SYNTHASE-LIKE 3) encodes a protein similar to callose synthase C.G. S.X.
0.16 2e-35 153 At5g36870 833654 ATGSL09 (glucan synthase-like 9) encodes a gene similar to callose synthase C.G. S.X.
0.11 2e-26 123 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase C.G. S.X.
0.13 6e-23 111 At2g13680 815852 CALS5 (CALLOSE SYNTHASE 5) Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen. C.G. S.X.
0.11 1e-17 93 At3g59100 825079 ATGSL11 (glucan synthase-like 11) encodes a protein similar to callose synthase C.G. S.X.
0.04 5e-11 71 At4g04970 825838 GSL1 (GLUCAN SYNTHASE-LIKE 1) encodes a gene similar to callose synthase C.G. S.X.
0.06 1e-8 63 At2g36850 818258 GSL8 (GLUCAN SYNTHASE-LIKE 8) Encodes GSL8, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL8 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. Also refer to GSL10 (At3g07160). C.G. S.X.
0.03 3e-6 56 At3g07160 819903 ATGSL10 (glucan synthase-like 10) Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-32 141 Glycine max Gma.4001.1.S1_at BI424053 - - 4e-11 At1g05570 CALS1 (CALLOSE SYNTHASE 1) C.G. S.X.
0.18 4e-53 210 Hordeum vulgare Contig4949_at Contig4949 - - 3e-53 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
0.30 1e-65 254 Oryza sativa Os02g0832500 AK105109.1 - Glycosyl transferase, family 48 protein 3e-66 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
0.22 2e-100 369 Populus trichocarpa PtpAffx.3087.1.A1_s_at CV256705 hypothetical protein - 8e-66 At1g05570 CALS1 (CALLOSE SYNTHASE 1) C.G. S.X.
0.11 1e-45 186 Triticum aestivum TaAffx.37149.1.A1_at BJ298442 - - 1e-46 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
0.12 2e-47 190 Vitis vinifera 1613862_at CF211656 hypothetical protein LOC100256340 - 7e-48 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
0.20 2e-27 125 Zea mays Zm.13598.1.A1_at AY107727.1 - - 2e-27 At5g13000 ATGSL12 (glucan synthase-like 12) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006075 The chemical reactions and pathways resulting in the formation of beta-1,3 glucans, compounds composed of glucose residues linked by 1,3-beta-D-glucosidic bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00358 Callose/glucan biosynthesis
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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