Gene omics information

Query gene ID At5g13000
Gene name ATGSL12 (glucan synthase-like 12)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseS.X.H.G.
0.4457.2At1g18250838405ATLP-1encodes a thaumatin-like proteinS.X.H.G.
0.3133.8At3g42660823286nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAVS.X.H.G.
0.2217.5At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POS.X.H.G.
0.1811.4At1g74260843766PUR4 (purine biosynthesis 4)Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.S.X.H.G.
0.157.8At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
166.9100.0GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
130.199.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
123.499.9GSM133779Lindsey_1-5_globular-basal_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
103.999.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
100.699.9GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
94.299.9GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
74.499.9GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.599.9GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.299.9GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
67.799.9GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.381e-79299At1g05570837059CALS1 (CALLOSE SYNTHASE 1)Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.C.G.S.X.
0.331e-51206At2g31960817755ATGSL03 (GLUCAN SYNTHASE-LIKE 3)encodes a protein similar to callose synthaseC.G.S.X.
0.162e-35153At5g36870833654ATGSL09 (glucan synthase-like 9)encodes a gene similar to callose synthaseC.G.S.X.
0.112e-26123At1g06490837160ATGSL07 (glucan synthase-like 7)encodes a gene similar to callose synthaseC.G.S.X.
0.136e-23111At2g13680815852CALS5 (CALLOSE SYNTHASE 5)Responsible for the synthesis of callose deposited at the primary cell wall of meiocytes, tetrads and microspores. Required for exine formation during microgametogenesis and for pollen viability. Highest expression in meiocytes, tetrads, microspores and mature pollen.C.G.S.X.
0.111e-1793At3g59100825079ATGSL11 (glucan synthase-like 11)encodes a protein similar to callose synthaseC.G.S.X.
0.045e-1171At4g04970825838GSL1 (GLUCAN SYNTHASE-LIKE 1)encodes a gene similar to callose synthaseC.G.S.X.
0.061e-863At2g36850818258GSL8 (GLUCAN SYNTHASE-LIKE 8)Encodes GSL8, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL8 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. Also refer to GSL10 (At3g07160).C.G.S.X.
0.033e-656At3g07160819903ATGSL10 (glucan synthase-like 10)Encodes GSL10, a member of the Glucan Synthase-Like (GSL) family believed to be involved in the synthesis of the cell wall component callose. GSL10 is required for male gametophyte development and plant growth. Has a role in entry of microspores into mitosis. GSL10 mutation leads to perturbation of microspore division symmetry, irregular callose deposition and failure of generative cell engulfment by the vegetative cell cytoplasm. Also refer to GSL8 (At2g36850).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.079e-32141Glycine maxGma.4001.1.S1_atBI424053--4e-11At1g05570CALS1 (CALLOSE SYNTHASE 1)C.G.S.X.
0.184e-53210Hordeum vulgareContig4949_atContig4949--3e-53At5g13000ATGSL12 (glucan synthase-like 12)C.G.S.X.
0.301e-65254Oryza sativaOs02g0832500AK105109.1-Glycosyl transferase, family 48 protein3e-66At5g13000ATGSL12 (glucan synthase-like 12)C.G.S.X.
0.222e-100369Populus trichocarpaPtpAffx.3087.1.A1_s_atCV256705hypothetical protein-8e-66At1g05570CALS1 (CALLOSE SYNTHASE 1)C.G.S.X.
0.111e-45186Triticum aestivumTaAffx.37149.1.A1_atBJ298442--1e-46At5g13000ATGSL12 (glucan synthase-like 12)C.G.S.X.
0.122e-47190Vitis vinifera1613862_atCF211656hypothetical protein LOC100256340-7e-48At5g13000ATGSL12 (glucan synthase-like 12)C.G.S.X.
0.202e-27125Zea maysZm.13598.1.A1_atAY107727.1--2e-27At5g13000ATGSL12 (glucan synthase-like 12)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006075The chemical reactions and pathways resulting in the formation of beta-1,3 glucans, compounds composed of glucose residues linked by 1,3-beta-D-glucosidic bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00358Link to KaPPA-View 4Callose/glucan biosynthesis
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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