CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12940

Gene name leucine-rich repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA S.X. H.G.
0.89 94.6 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.75 86.9 At5g59070 836024 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMF S.X. H.G.
0.67 81.6 At2g45400 819146 BEN1 involved in the regulation of brassinosteroid metabolic pathway S.X. H.G.
0.33 38.1 At4g00080 828192 UNE11 (unfertilized embryo sac 11) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
176.5 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
171.7 100.0 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
137.8 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
135.9 99.9 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
103.7 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
89.6 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
88.0 99.9 GSM184488 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
82.1 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.7 99.9 GSM184485 Epidermis&Cortex root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.7 99.8 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 1e-11 71 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA C.G. S.X.
0.01 6e-1 36 At5g12480 831123 CPK7 (calmodulin-domain protein kinase 7) calmodulin-domain protein kinase CDPK isoform 7 (CPK7) C.G. S.X.
0.02 6e-1 36 At3g44790 823610 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFA C.G. S.X.
0.02 6e-1 36 At1g72510 843583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g13660 831211 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-2 40 Glycine max Gma.2030.1.S1_at CD418266 - - 6e-11 At3g20820 leucine-rich repeat family protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEa0005O15r2_s_at HVSMEa0005O15r2 - - 3e-2 At3g09032 unknown protein C.G. S.X.
0.03 2e-2 42 Oryza sativa Os08g0505900 AK060670.1 - DNA-damage-repair/toleration protein DRT100precursor 1e-2 At5g12940 leucine-rich repeat family protein C.G. S.X.
0.07 1e-5 52 Populus trichocarpa PtpAffx.3745.2.S1_at CA934783 hypothetical protein - 1e-5 At5g12940 leucine-rich repeat family protein C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.107913.1.S1_at CA693419 - - 4e+0 At5g24270 SOS3 (SALT OVERLY SENSITIVE 3) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619550_at CK136968.1 hypothetical LOC100254224 - 1e+0 At5g64990 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.4050.1.A1_at AI834099 Hypothetical protein LOC100191879 - 1e+1 At5g66160 JR700 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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