CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12930

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g12930 831133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF S.X. H.G.
0.40 50.8 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
0.33 38.1 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.21 15.8 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.01 0.2 At1g08940 837415 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
155.3 99.9 E-MEXP-546-raw-cel-863289532
98.2 99.9 E-NASC-76-raw-cel-1359879106
95.0 99.9 E-MEXP-546-raw-cel-863289476
72.8 99.9 E-MEXP-546-raw-cel-863289424
70.7 99.9 E-NASC-76-raw-cel-1359878951
58.8 99.8 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
55.3 99.8 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
54.9 99.8 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
52.6 99.8 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
51.9 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At2g16280 816124 KCS9 (3-KETOACYL-COA SYNTHASE 9) Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 2e-1 38 At1g27180 839607 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 2e-1 38 At1g27170 839606 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
0.01 7e-1 36 At5g02970 831719 hydrolase, alpha/beta fold family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BPOFMA C.G. S.X.
0.01 7e-1 36 At5g55130 835604 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) putative molybdopterin synthase sulphurylase (cnx5) C.G. S.X.
0.01 7e-1 36 At5g40760 834076 G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. C.G. S.X.
0.01 7e-1 36 At3g29390 822600 RIK (RS2-Interacting KH protein) Nuclear localized K-homology containing protein that interacts with AS1. C.G. S.X.
0.01 7e-1 36 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.74499.1.A1_at BU550994 - - 2e+0 At5g17470 calmodulin-related protein, putative C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig7433_at Contig7433 - - 5e-11 At5g63650 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) C.G. S.X.
0.02 5e+0 34 Oryza sativa Os12g0285200 9640.m01846 - - 2e-1 At5g60030 unknown protein C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.72903.1.S1_at CX655584 hypothetical protein - 5e-4 At5g12930 unknown protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum Ta.5177.1.A1_at BJ283077 - - 3e-1 At3g59890 dihydrodipicolinate reductase family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1618172_at BQ796406 hypothetical protein LOC100252869 - 8e-5 At5g05830 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.619.1.A1_at AI715047 - - 8e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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