CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12340

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g12340 831109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.84 91.9 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.83 91.4 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.83 91.4 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.81 90.4 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.80 89.8 At1g56060 842057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.80 89.8 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.79 89.1 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.79 89.1 At3g23250 821904 MYB15 (MYB DOMAIN PROTEIN 15) Member of the R2R3 factor gene family. S.X. H.G.
0.78 88.6 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
379.3 100.0 E-MEXP-807-raw-cel-1173273144
289.6 100.0 E-MEXP-807-raw-cel-1173273116
224.0 100.0 E-MEXP-807-raw-cel-1173273223
213.0 100.0 E-MEXP-807-raw-cel-1173273088
198.9 100.0 E-MEXP-807-raw-cel-1173273060
192.8 100.0 E-MEXP-807-raw-cel-1173273252
175.9 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
171.9 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
169.6 100.0 E-MEXP-807-raw-cel-1173273170
166.2 100.0 E-MEXP-807-raw-cel-1173273196
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e+0 34 At5g02870 831756 60S ribosomal protein L4/L1 (RPL4D) F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPB C.G. S.X.
0.02 1e+0 34 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd C.G. S.X.
0.02 1e+0 34 At3g09630 820120 60S ribosomal protein L4/L1 (RPL4A) F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPB C.G. S.X.
0.04 1e+0 34 At2g14282 3768195 SCRL18 (SCR-Like 18) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). C.G. S.X.
0.02 1e+0 34 At2g29410 817490 MTPB1 (METAL TOLERANCE PROTEIN B1) member of Zinc transporter (ZAT) family C.G. S.X.
0.02 1e+0 34 At2g46970 819311 PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.88672.1.A1_at CD417045 - - 5e-14 At4g02405 unknown protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare HW05J06u_at HW05J06u - - 4e+0 At5g12340 unknown protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os08g0526900 9636.m04217 - - 3e-1 At5g12340 unknown protein C.G. S.X.
0.08 3e-2 40 Populus trichocarpa PtpAffx.204806.1.S1_at pmrna9474 hypothetical protein - 2e-2 At5g12340 unknown protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.4779.1.S1_at BJ271542 - - 9e-1 At5g20920 EIF2 BETA C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1614277_at CF200928.1 hypothetical protein LOC100246943 - 6e-8 At3g19420 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) C.G. S.X.
0.03 6e-1 34 Zea mays Zm.17600.1.S1_at CK368995 guanylate kinase - 3e-1 At3g06200 guanylate kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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