Gene omics information

Query gene ID At5g12340
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g12340831109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.8491.9At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.8391.4At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.8391.4At2g37430818319zinc finger (C2H2 type) family protein (ZAT11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOFS.X.H.G.
0.8190.4At1g22810838887AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
0.8089.8At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.8089.8At1g30370839917lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMVS.X.H.G.
0.7989.1At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVS.X.H.G.
0.7989.1At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.S.X.H.G.
0.7888.6At5g24110832476WRKY30member of WRKY Transcription Factor; Group IIIS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
379.3100.0E-MEXP-807-raw-cel-1173273144
289.6100.0E-MEXP-807-raw-cel-1173273116
224.0100.0E-MEXP-807-raw-cel-1173273223
213.0100.0E-MEXP-807-raw-cel-1173273088
198.9100.0E-MEXP-807-raw-cel-1173273060
192.8100.0E-MEXP-807-raw-cel-1173273252
175.9100.0GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
171.9100.0GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
169.6100.0E-MEXP-807-raw-cel-1173273170
166.2100.0E-MEXP-807-raw-cel-1173273196
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e+034At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBC.G.S.X.
0.021e+034At5g42100834215ATBG_PAPencodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of PdC.G.S.X.
0.021e+034At3g0963082012060S ribosomal protein L4/L1 (RPL4A)F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPBC.G.S.X.
0.041e+034At2g142823768195SCRL18 (SCR-Like 18)Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).C.G.S.X.
0.021e+034At2g29410817490MTPB1 (METAL TOLERANCE PROTEIN B1)member of Zinc transporter (ZAT) familyC.G.S.X.
0.021e+034At2g46970819311PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.88672.1.A1_atCD417045--5e-14At4g02405unknown proteinC.G.S.X.
0.043e+032Hordeum vulgareHW05J06u_atHW05J06u--4e+0At5g12340unknown proteinC.G.S.X.
0.036e-136Oryza sativaOs08g05269009636.m04217--3e-1At5g12340unknown proteinC.G.S.X.
0.083e-240Populus trichocarpaPtpAffx.204806.1.S1_atpmrna9474hypothetical protein-2e-2At5g12340unknown proteinC.G.S.X.
0.045e+032Triticum aestivumTa.4779.1.S1_atBJ271542--9e-1At5g20920EIF2 BETAC.G.S.X.
0.044e-134Vitis vinifera1614277_atCF200928.1hypothetical protein LOC100246943-6e-8At3g19420ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)C.G.S.X.
0.036e-134Zea maysZm.17600.1.S1_atCK368995guanylate kinase-3e-1At3g06200guanylate kinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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